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IMG/VR database: genomes of cultivated and uncultivated viruses

Paez-Espino D., Eloe-Fadrosh EA., Pavlopoulos GA., Thomas AD., Huntemann M., Mikhailova N., Rubin E., Ivanova NN., Kyrpides NC. 2016. Uncovering Earth’s virome. Nature 536:425–430. DOI: 10.1038/nature19094.

Paez-Espino D., Chen I-MA., Palaniappan K., Ratner A., Chu K., Szeto E., Pillay M., Huang J., Markowitz VM., Nielsen T., Huntemann M., K Reddy TB., Pavlopoulos GA., Sullivan MB., Campbell BJ., Chen F., McMahon K., Hallam SJ., Denef V., Cavicchioli R., Caffrey SM., Streit WR., Webster J., Handley KM., Salekdeh GH., Tsesmetzis N., Setubal JC., Pope PB., Liu W-T., Rivers AR., Ivanova NN., Kyrpides NC. 2016. IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses. Nucleic acids research 45:D457–D465. DOI: 10.1093/nar/gkw1030.

Paez-Espino D., Pavlopoulos GA., Ivanova NN., Kyrpides NC. 2017. Nontargeted virus sequence discovery pipeline and virus clustering for metagenomic data. Nature Protocols 12:1673–1682. DOI: 10.1038/nprot.2017.063.

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.