IMG_VR

IMG/VR database: genomes of cultivated and uncultivated viruses

Virome graphic art

Recent experimental and computational improvements have led to a dramatic increase in the number of viral genome sequences identified primarily from metagenomic samples. On this page, the viral sequences publicly released in IMG/VR, which have been collected from NCBI RefSeq and IMG metagenomes, can be downloaded in bulk (see Download tab). The IMG/VR system (https://img.jgi.doe.gov/vr) serves as a starting point for the analysis of viral genome fragments derived from metagenomic samples: virus detection methods and host assignment approaches in IMG/VR are fully described in Paez-Espino et al. Nature, 2016 "Uncovering Earth's virome" and in Paez-Espino et al. Nature Protocols, 2017 "Nontargeted virus sequence discovery pipeline and virus clustering for metagenomic data". 

Files are available for each IMG/VR release in separate folders identified by the release date. Available files include:

  • nucleotide sequences from viral genomes and contigs (fasta format)
  • protein sequences predicted from viral genomes and contigs (fasta format)
  • a table listing the characteristics of each viral sequence such as its origin, affiliation, and predicted host (tsv format).
  • for release 5 and later: a table listing the information used for host prediction for each viral sequence (when available)

If you use this resource, please cite "IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses". 

The different download releases correspond to different versions of the website as follows:

  • IMG_VR_2017-01-01_2 - IMG/VR
  • IMG_VR_2018-01-01_3 - IMG/VR v2
  • IMG_VR_2018-07-01_4 - IMG/VR v2
  • IMG_VR_2020-09-10_5 - IMG/VR v3
  • IMG_VR_2020-10-12_5.1 - IMG/VR v3