Cokeromyces recurvatus NRRL 2243 v1.0
On September 25, 2017 our website will be switching from HTTP to HTTPS (Secure Protocol). If you use the Download API please add the "-L" parameter to your curl commands. Sorry for the inconvenience.

Status

[January 2017] The Cokeromyces recurvatus NRRL 2243 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Cokeromyces recurvatus NRRL 2243 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 28.12
Sequencing read coverage depth 245.77x
# of contigs 85
# of scaffolds 85
# of scaffolds >= 2Kbp 75
Scaffold N50 12
Scaffold L50 (Mbp) 0.81
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.30, 1.52, 1.47


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 47241 44560 94.3%
Ests est.fasta 158327014 146766549 92.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1629 1369
transcript 1353 1121
exon 322 188
intron 88 74
description:
protein length (aa) 396 314
exons per gene 4.20 4
# of gene models 10916


Collaborators

Joey Spatafora, Oregon State, Oregon

Jason Stajich, UC Riverside, California

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.