An Error Occurred:

/templates/ng-portal-template.xhtml @31,107 value="#{headerBean.headerBodyHtml}": Error reading [headerBodyHtml] on type [gov.doe.jgi.portal.view.pages.HeaderBean]

+ Stack Trace

javax.el.ELException: /templates/ng-portal-template.xhtml @31,107 value="#{headerBean.headerBodyHtml}": Error reading [headerBodyHtml] on type [gov.doe.jgi.portal.view.pages.HeaderBean]
	at com.sun.facelets.el.TagValueExpression.getValue(TagValueExpression.java:76)
	at javax.faces.component.ComponentStateHelper.eval(ComponentStateHelper.java:194)
	at javax.faces.component.ComponentStateHelper.eval(ComponentStateHelper.java:182)
	at javax.faces.component.UIOutput.getValue(UIOutput.java:174)
	at com.sun.faces.renderkit.html_basic.HtmlBasicInputRenderer.getValue(HtmlBasicInputRenderer.java:205)
	at com.sun.faces.renderkit.html_basic.HtmlBasicRenderer.getCurrentValue(HtmlBasicRenderer.java:355)
	at com.sun.faces.renderkit.html_basic.HtmlBasicRenderer.encodeEnd(HtmlBasicRenderer.java:164)
	at javax.faces.component.UIComponentBase.encodeEnd(UIComponentBase.java:924)
	at javax.faces.component.UIComponent.encodeAll(UIComponent.java:1863)
	at javax.faces.component.UIComponent.encodeAll(UIComponent.java:1859)
	at com.sun.facelets.FaceletViewHandler.renderView(FaceletViewHandler.java:592)
	at org.ajax4jsf.application.ViewHandlerWrapper.renderView(ViewHandlerWrapper.java:100)
	at org.ajax4jsf.application.AjaxViewHandler.renderView(AjaxViewHandler.java:176)
	at gov.doe.jgi.portal.view.common.DefaultViewHandler.renderView(DefaultViewHandler.java:167)
	at com.sun.faces.lifecycle.RenderResponsePhase.execute(RenderResponsePhase.java:120)
	at com.sun.faces.lifecycle.Phase.doPhase(Phase.java:101)
	at com.sun.faces.lifecycle.LifecycleImpl.render(LifecycleImpl.java:219)
	at javax.faces.webapp.FacesServlet.service(FacesServlet.java:647)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:231)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
	at org.ajax4jsf.webapp.BaseXMLFilter.doXmlFilter(BaseXMLFilter.java:206)
	at org.ajax4jsf.webapp.BaseFilter.handleRequest(BaseFilter.java:290)
	at org.ajax4jsf.webapp.BaseFilter.processUploadsAndHandleRequest(BaseFilter.java:388)
	at org.ajax4jsf.webapp.BaseFilter.doFilter(BaseFilter.java:515)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
	at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
	at gov.doe.jgi.portal.framework.view.RequestLifecicleAwareFilter.doFilter(RequestLifecicleAwareFilter.java:39)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
	at gov.doe.jgi.portal.framework.config.ConfigFilter.doFilter(ConfigFilter.java:27)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
	at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:711)
	at org.apache.catalina.core.ApplicationDispatcher.processRequest(ApplicationDispatcher.java:460)
	at org.apache.catalina.core.ApplicationDispatcher.doForward(ApplicationDispatcher.java:387)
	at org.apache.catalina.core.ApplicationDispatcher.forward(ApplicationDispatcher.java:315)
	at gov.doe.jgi.portal.view.common.StaticContentFilter.doFilter(StaticContentFilter.java:412)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
	at gov.doe.jgi.portal.framework.view.RequestLifecicleAwareFilter.doFilter(RequestLifecicleAwareFilter.java:39)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
	at gov.doe.jgi.portal.framework.config.ConfigFilter.doFilter(ConfigFilter.java:27)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
	at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:199)
	at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:97)
	at org.keycloak.adapters.tomcat.AbstractAuthenticatedActionsValve.invoke(AbstractAuthenticatedActionsValve.java:67)
	at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:544)
	at org.keycloak.adapters.tomcat.AbstractKeycloakAuthenticatorValve.invoke(AbstractKeycloakAuthenticatorValve.java:181)
	at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:143)
	at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:81)
	at org.apache.catalina.valves.RemoteIpValve.invoke(RemoteIpValve.java:764)
	at gov.doe.jgi.portal.tomcat.SessionInvalidateValve.invoke(SessionInvalidateValve.java:80)
	at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:78)
	at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:364)
	at org.apache.coyote.ajp.AjpProcessor.service(AjpProcessor.java:526)
	at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:65)
	at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:831)
	at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1629)
	at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
	at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.reflect.UndeclaredThrowableException
	at com.sun.proxy.$Proxy220.getAvailableResourceNames(Unknown Source)
	at gov.doe.jgi.portal.paaf.client.AccessManager$1.provide(AccessManager.java:663)
	at gov.doe.jgi.portal.paaf.client.AccessManager$1.provide(AccessManager.java:657)
	at gov.doe.jgi.portal.framework.cache.TimedDataProvider.get(TimedDataProvider.java:23)
	at gov.doe.jgi.portal.paaf.client.AccessManager.isGenomeOrGroupPublic(AccessManager.java:670)
	at gov.doe.jgi.portal.paaf.client.AccessManager$Proxy$_$$_WeldClientProxy.isGenomeOrGroupPublic(Unknown Source)
	at gov.doe.jgi.portal.view.pages.HeaderBean.appendTopNavigation(HeaderBean.java:110)
	at gov.doe.jgi.portal.view.pages.HeaderBean.appendTopNavigationForOrganism(HeaderBean.java:187)
	at gov.doe.jgi.portal.view.pages.HeaderBean.appendTopNavigation(HeaderBean.java:225)
	at gov.doe.jgi.portal.view.pages.HeaderBean.getHeaderBodyHtml(HeaderBean.java:348)
	at gov.doe.jgi.portal.view.pages.HeaderBean.getHeaderBodyHtml(HeaderBean.java:341)
	at sun.reflect.GeneratedMethodAccessor196.invoke(Unknown Source)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at javax.el.BeanELResolver.getValue(BeanELResolver.java:94)
	at com.sun.faces.el.DemuxCompositeELResolver._getValue(DemuxCompositeELResolver.java:176)
	at com.sun.faces.el.DemuxCompositeELResolver.getValue(DemuxCompositeELResolver.java:203)
	at org.apache.el.parser.AstValue.getValue(AstValue.java:169)
	at org.apache.el.ValueExpressionImpl.getValue(ValueExpressionImpl.java:190)
	at org.jboss.weld.el.WeldValueExpression.getValue(WeldValueExpression.java:50)
	at com.sun.facelets.el.TagValueExpression.getValue(TagValueExpression.java:71)
	... 67 more
Caused by: java.lang.reflect.InvocationTargetException
	at sun.reflect.GeneratedMethodAccessor333.invoke(Unknown Source)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at gov.doe.jgi.portal.framework.hessian.HessianClientWrapper$DelegateHolder.invokeOnce(HessianClientWrapper.java:69)
	at gov.doe.jgi.portal.framework.hessian.HessianClientWrapper$DelegateHolder.access$500(HessianClientWrapper.java:51)
	at gov.doe.jgi.portal.framework.hessian.HessianClientWrapper.invokeOnDelegate(HessianClientWrapper.java:140)
	at gov.doe.jgi.portal.framework.hessian.HessianClientWrapper.invoke(HessianClientWrapper.java:189)
	... 88 more
Caused by: org.hibernate.exception.GenericJDBCException: Could not open connection
	at org.hibernate.exception.internal.StandardSQLExceptionConverter.convert(StandardSQLExceptionConverter.java:54)
	at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert(SqlExceptionHelper.java:126)
	at org.hibernate.engine.jdbc.spi.SqlExceptionHelper.convert(SqlExceptionHelper.java:112)
	at org.hibernate.engine.jdbc.internal.LogicalConnectionImpl.obtainConnection(LogicalConnectionImpl.java:235)
	at org.hibernate.engine.jdbc.internal.LogicalConnectionImpl.getConnection(LogicalConnectionImpl.java:171)
	at org.hibernate.internal.SessionImpl.connection(SessionImpl.java:450)
	at gov.doe.jgi.portal.framework.data.EntityManagerFactoryService.associateEntityManagerWithOrganism(EntityManagerFactoryService.java:254)
	at gov.doe.jgi.portal.framework.data.EntityManagerFactoryService.getOrCreateEm(EntityManagerFactoryService.java:247)
	at gov.doe.jgi.portal.framework.data.EntityManagerFactoryService$Proxy$_$$_WeldClientProxy.getOrCreateEm(Unknown Source)
	at gov.doe.jgi.portal.paaf.services.LoginManager.em(LoginManager.java:134)
	at gov.doe.jgi.portal.paaf.services.LoginManager.getResourcesForRegularUser(LoginManager.java:762)
	at gov.doe.jgi.portal.paaf.services.LoginManager.getResources(LoginManager.java:706)
	at gov.doe.jgi.portal.paaf.services.LoginManager.getAvailableResourceNames(LoginManager.java:671)
	at gov.doe.jgi.portal.paaf.services.LoginManager$Proxy$_$$_WeldClientProxy.getAvailableResourceNames(Unknown Source)
	at gov.doe.jgi.portal.paaf.services.PaafRequestsHessianService.getAvailableResourceNames(PaafRequestsHessianService.java:104)
	at sun.reflect.GeneratedMethodAccessor168.invoke(Unknown Source)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at com.caucho.hessian.server.HessianSkeleton.invoke(HessianSkeleton.java:302)
	at com.caucho.hessian.server.HessianSkeleton.invoke(HessianSkeleton.java:198)
	at com.caucho.hessian.server.HessianServlet.invoke(HessianServlet.java:399)
	at com.caucho.hessian.server.HessianServlet.service(HessianServlet.java:379)
	at gov.doe.jgi.portal.paaf.services.PaafRequestsHessianService.service(PaafRequestsHessianService.java:42)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:231)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
	at gov.doe.jgi.portal.framework.view.RequestLifecicleAwareFilter.doFilter(RequestLifecicleAwareFilter.java:39)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
	at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
	at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
	at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
	at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:199)
	at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:97)
	at org.keycloak.adapters.tomcat.AbstractAuthenticatedActionsValve.invoke(AbstractAuthenticatedActionsValve.java:67)
	at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:544)
	at org.keycloak.adapters.tomcat.AbstractKeycloakAuthenticatorValve.invoke(AbstractKeycloakAuthenticatorValve.java:181)
	at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:143)
	at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:81)
	at org.apache.catalina.valves.RemoteIpValve.invoke(RemoteIpValve.java:764)
	at gov.doe.jgi.portal.tomcat.SessionInvalidateValve.invoke(SessionInvalidateValve.java:80)
	at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:78)
	at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:364)
	at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:616)
	... 8 more
Caused by: java.sql.SQLException: Exception while issuing connection to '@portal-db-1.jgi.lbl.gov'
	at gov.doe.jgi.portal.framework.data.ConfigurationAwareConnectionPool.issueConnection(ConfigurationAwareConnectionPool.java:610)
	at gov.doe.jgi.portal.framework.data.ConfigurationAwareConnectionPool.getConnectionForDbHost(ConfigurationAwareConnectionPool.java:491)
	at gov.doe.jgi.portal.framework.data.ConfigurationAwareConnectionPool$Proxy$_$$_WeldClientProxy.getConnectionForDbHost(Unknown Source)
	at gov.doe.jgi.portal.framework.data.PooledConnectionsProvider.getConnection(PooledConnectionsProvider.java:45)
	at org.hibernate.internal.AbstractSessionImpl$NonContextualJdbcConnectionAccess.obtainConnection(AbstractSessionImpl.java:380)
	at org.hibernate.engine.jdbc.internal.LogicalConnectionImpl.obtainConnection(LogicalConnectionImpl.java:228)
	... 47 more
Caused by: java.sql.SQLException: An attempt by a client to checkout a Connection has timed out.
	at com.mchange.v2.sql.SqlUtils.toSQLException(SqlUtils.java:118)
	at com.mchange.v2.sql.SqlUtils.toSQLException(SqlUtils.java:77)
	at com.mchange.v2.c3p0.impl.C3P0PooledConnectionPool.checkoutPooledConnection(C3P0PooledConnectionPool.java:687)
	at com.mchange.v2.c3p0.impl.AbstractPoolBackedDataSource.getConnection(AbstractPoolBackedDataSource.java:140)
	at gov.doe.jgi.portal.framework.data.ConfigurationAwareConnectionPool.issueConnection(ConfigurationAwareConnectionPool.java:595)
	... 52 more
Caused by: com.mchange.v2.resourcepool.TimeoutException: A client timed out while waiting to acquire a resource from com.mchange.v2.resourcepool.BasicResourcePool@75852b51 -- timeout at awaitAvailable()
	at com.mchange.v2.resourcepool.BasicResourcePool.awaitAvailable(BasicResourcePool.java:1416)
	at com.mchange.v2.resourcepool.BasicResourcePool.prelimCheckoutResource(BasicResourcePool.java:606)
	at com.mchange.v2.resourcepool.BasicResourcePool.checkoutResource(BasicResourcePool.java:526)
	at com.mchange.v2.c3p0.impl.C3P0PooledConnectionPool.checkoutAndMarkConnectionInUse(C3P0PooledConnectionPool.java:755)
	at com.mchange.v2.c3p0.impl.C3P0PooledConnectionPool.checkoutPooledConnection(C3P0PooledConnectionPool.java:682)
	... 54 more

+ Component Tree

<AjaxViewRoot id="_viewRoot" immediate="false" inView="true" locale="en_US" renderKitId="HTML_BASIC" renderRegionOnly="false" rendered="true" selfRendered="false" submitted="false" transient="false" viewId="/pages/tmplInfoDefault.xhtml">
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd" >
<html ng-app="UtilApp" xmlns="http://www.w3.org/1999/xhtml"> <head>
<HtmlOutputText escape="false" id="j_id4" inView="true" rendered="true" transient="false" value="<link href="/portal/css/genome2.css" rel="stylesheet" type="text/css"/> <!--[if lt IE 8]><script src="/portal/js/IE8.js" type="text/javascript"></script><![endif]--><script type="text/javascript" src="/portal/js/ie_workarounds.js"></script><!--[if IE 6]><link type="text/css" rel="stylesheet" href="/portal/css/ie6.css"><![endif]--><title>Info - Russula brevipes BPL707 Standard Draft</title> <link href="/portal/css/other_genomes.css" rel="stylesheet" type="text/css"/> <!-- Google tag (gtag.js) --> <script async src="https://www.googletagmanager.com/gtag/js?id=G-XCXPZ4EQ28"></script> <script> window.dataLayer = window.dataLayer || []; function gtag(){dataLayer.push(arguments);} gtag('js', new Date()); gtag('config', 'G-XCXPZ4EQ28');</script> "/>
<HtmlAjaxOutputPanel ajaxRendered="false" id="j_id5" inView="true" keepTransient="true" layout="none" rendered="false" transient="false">
<title>
#{genericContentBean.organismDisplayName} - Info
</title>
</HtmlAjaxOutputPanel>
<script type="text/javascript" src="../pages/angular/js/libs/jquery-3.5.1.min.js"> </script> <script src="../pages/angular/js/libs/jquery-migrate-3.3.0.min.js"/> <script type="text/javascript" src="../jqueryui/1.10.3/jquery-ui.min.js"/> <link rel="stylesheet" href="../jqueryui/1.10.3/themes/smoothness/jquery-ui.css"/> <script src="../pages/angular/js/genomePortalPrefix.js"/>
<link rel="stylesheet" type="text/css" href="../pages/angular/css/bootstrap-3.0.0.min.css"/> <link rel="stylesheet" type="text/css" href="../css/jquery-ui-customized/jquery-ui-1.8.10.custom.css"/> <link rel="stylesheet" type="text/css" href="../pages/organisms-group-info.css"/> <link rel="stylesheet" type="text/css" href="../pages/angular/css/style.css"/> <link rel="stylesheet" type="text/css" href="../pages/tmpl.css"/> <link type="text/css" rel="stylesheet" href="../css/search.css"/> <link type="text/css" rel="stylesheet" href="../css/genome2.css"/> <style> [ng\:cloak], [ng-cloak], [data-ng-cloak], [x-ng-cloak], .ng-cloak, .x-ng-cloak { display: none !important; } .richfacesSkin table.mceLayout { border: none; } .richfacesSkin table.mceLayout tr.mceFirst td { border-top: none; } .genomes td { padding: 7px; /*border: 1px solid #D3D4EF;*/ } </style> <script src="../pages/angular/js/libs/angular-1.2.5.js"/> <script src="../pages/angular/js/libs/angular-sanitize-1.1.5.min.js"/> <script src="../pages/angular/js/libs/ng-csv.js"/> <script src="../pages/angular/js/libs/ui-bootstrap-tpls-0.9.0.js"/> <script src="../pages/angular/js/services/genomePortalHttp.js"/> <script src="../pages/angular/js/services/utilApp.js"/> <script src="../pages/angular/js/controllers/dialogController.js"/> <script type="text/javascript" src="../js/jquery.timers.js"/> <script type="text/javascript" src="../pages/tmpl.js"/> <script type="text/javascript"> <!-- jQuery.noConflict(); history.navigationMode = 'compatible'; jQuery(document).ready(function() { // executeGroupInfoSearch(); // alert('jQuerydocumentready called in tmplInfoGroup!'); }); --> </script>
<HtmlAjaxOutputPanel ajaxRendered="false" id="j_id11" inView="true" keepTransient="true" layout="none" rendered="false" transient="false">
<link href="../css/help.css" rel="stylesheet" type="text/css"/>
</HtmlAjaxOutputPanel>
</head> <body class="#{headerBean.bodyClass}" ng-cloak="true" ng-controller="DialogController"> <div class="header_open" id="fold_control_panel"/> <div id="foldable">
<HtmlOutputText escape="false" id="j_id14" inView="true" rendered="true" transient="false" value="<div class="header_wrap"> <header id="jgi-header"><div id="jgi-logo"><a target="_parent" href="/portal/" title="DOE Joint Genome Institute - JGI Genome Portal"><img width="480" height="70" src="/portal/images/logo-JGI-GenomePortal.png" alt="DOE Joint Genome Institute's Genome Portal logo" /></a></div><nav class="jgi-nav"><ul><li id="skipto"><a href="#skipnav" accesskey="S">Skip To Main Content</a></li> <li><a href="http://jgi.doe.gov" target="_parent">JGI Home</a></li> <li><a href="/portal/" target="_parent">Genome Portal</a></li> <li><a class="textlink" id="login" target="_parent" href="javascript: if(top.window.location.href.search('accessDenied')==-1) { document.cookie='jgi_return=' + escape(top.window.location.href) + '; domain=.jgi.doe.gov; path=/;'; } top.window.location.href='https://signon.jgi.doe.gov/signon';">Login</a></li><li><div class="ng-cloak"><a target="_parent" class="textlink" href="/portal/myCart"><img alt="Cart icon" src="/portal/images/cart.png" width="16" height="16"/><span style="text-transform:lowercase"> ({{getPortalsInCart()}} items)</span></a> </div></li></ul></nav></header><div class="header_top"><div class="float_right"><div class="organismName">Russula brevipes BPL707 Standard Draft</div></div></div></div> <div class="menu_holder"><div class="menu_group"><ul> <li> <a class="selected" href="/portal/RusbreStandDraft_2/RusbreStandDraft_2.info.html" target="_parent" >Info</a> </li> <li> <a class="" href="/portal/RusbreStandDraft_2/RusbreStandDraft_2.download.html" target="_parent" >Download</a> </li> <li> <a class="" href="/portal/pages/projectStatus.jsf?db=RusbreStandDraft_2" target="_parent" >Status</a> </li> <li> <a class="menu_help" href="javascript:;" alt="load context-sensitive help" onclick="window.open('/portal/api/help?referer=' + escape(location.href), 'small', 'height=600,width=980,status=0,titlebar=0,toolbar=1,location=0,menubar=0,scrollbars=1,resizable=1');" target="_parent" >HELP!</a> </li></ul></div></div><a name="skipnav"></a> "/>
<HtmlAjaxOutputPanel ajaxRendered="false" id="j_id15" inView="true" keepTransient="true" layout="block" rendered="false" styleClass="divider" transient="false"/>
<HtmlAjaxOutputPanel ajaxRendered="false" id="j_id16" inView="true" keepTransient="true" layout="block" rendered="false" styleClass="grey_row" transient="false">
<br/>
</HtmlAjaxOutputPanel>
</div> <div class="clear"/>
<div class="main_content">
<HtmlAjaxOutputPanel ajaxRendered="false" id="j_id20" inView="true" keepTransient="true" layout="inline" rendered="true" styleClass="analysis_project" transient="false">
<HtmlAjaxOutputPanel ajaxRendered="false" id="j_id21" inView="true" keepTransient="true" layout="inline" rendered="true" styleClass="" transient="false">
<HtmlForm enctype="application/x-www-form-urlencoded" id="info_prok" inView="true" prependId="true" rendered="false" submitted="false" transient="false">
<HtmlInputHidden id="portal_id_hidden" immediate="false" inView="true" localValueSet="false" rendered="true" required="false" transient="false" valid="true" value="RusbreStandDraft_2"/>
<input type="hidden" name="currentPage" value="INFO"/>
<HtmlMessages globalOnly="false" id="j_id23" inView="true" layout="list" redisplay="true" rendered="true" showDetail="false" showSummary="true" style="color:red;" tooltip="false" transient="false"/>
<HtmlInputHidden id="editing" immediate="false" inView="true" localValueSet="false" rendered="true" required="false" transient="false" valid="true" value="false"/>
<HtmlOutputText escape="true" id="display_name" inView="true" rendered="true" style="display:none" transient="false" value="Russula brevipes BPL707 Standard Draft"/>
<HtmlAjaxOutputPanel ajaxRendered="false" id="j_id24" inView="true" keepTransient="true" layout="block" rendered="true" styleClass="controls" transient="false">
<HtmlOutputLink disabled="false" id="j_id25" inView="true" rendered="true" styleClass="button_styled_blue r" transient="false" value="../organism-admin/edit-organism.jsf?organism=RusbreStandDraft_2">
Edit Portal Properties
</HtmlOutputLink>
<HtmlCommandLink action="#{genericContentBean.startEditing}" actionExpression="#{genericContentBean.startEditing}" disabled="false" id="j_id27" immediate="false" inView="true" rendered="true" styleClass="button_styled_blue" transient="false" value="Edit Page"/>
<div class="clear"/>
</HtmlAjaxOutputPanel>
<HtmlAjaxOutputPanel ajaxRendered="false" id="j_id29" inView="true" keepTransient="true" layout="block" rendered="false" styleClass="controls" transient="false">
<HtmlCommandLink action="#{genericContentBean.submit}" actionExpression="#{genericContentBean.submit}" disabled="false" id="submit_changes_1" immediate="false" inView="true" rendered="true" styleClass="button_styled_blue" transient="false" value="Submit Changes"/>
<HtmlCommandLink action="#{genericContentBean.reset}" actionExpression="#{genericContentBean.reset}" disabled="false" id="discard_changes_1" immediate="false" inView="true" rendered="true" styleClass="button_styled_blue r" transient="false" value="Cancel Changes"/>
<div class="clear"/>
</HtmlAjaxOutputPanel>
<HtmlAjaxOutputPanel ajaxRendered="false" id="j_id31" inView="true" keepTransient="true" layout="none" rendered="false" transient="false">
<HtmlAjaxOutputPanel ajaxRendered="false" id="j_id32" inView="true" keepTransient="true" layout="inline" rendered="true" styleClass="analysis_project" transient="false">
<HtmlAjaxOutputPanel ajaxRendered="false" id="j_id33" inView="true" keepTransient="true" layout="inline" rendered="true" styleClass="" transient="false">
<HtmlAjaxOutputPanel ajaxRendered="false" id="j_id34" inView="true" keepTransient="true" layout="inline" rendered="true" styleClass="no_frame" transient="false">
<div style="font-size: 1.15em;"> <div class="genome_properties"> <div class="sub_section">
<HtmlPanel id="j_id36" inView="true" rendered="false" styleClass="no_frame" transient="false">
<div class="label_form"> <b>
<HtmlOutputText escape="true" id="j_id38" inView="true" rendered="true" transient="false" value="Group Name: "/>
</b> </div> <div>
<HtmlOutputText escape="true" id="j_id40" inView="true" rendered="false" transient="false" value="Russula brevipes BPL707 Standard Draft"/>
</div>
</HtmlPanel>
<HtmlPanel id="j_id42" inView="true" rendered="true" styleClass="no_frame portal_title" transient="false">
<HtmlPanel id="j_id43" inView="true" rendered="true" styleClass="no_frame small_paddings wrapper" transient="false">
<div class="label_form"> <b>
<HtmlOutputText escape="true" id="j_id45" inView="true" rendered="false" transient="false" value="Project name:"/>
<HtmlOutputText escape="true" id="j_id46" inView="true" rendered="true" transient="false" value="Analysis Project name:"/>
<HtmlOutputText escape="true" id="j_id47" inView="true" rendered="false" transient="false" value="Seq. Project name:"/>
</b> </div> <div>
<HtmlOutputText escape="true" id="j_id49" inView="true" rendered="true" transient="false" value="Russula brevipes BPL707 Standard Draft"/>
<HtmlOutputText escape="true" id="j_id50" inView="true" rendered="false" transient="false" value="Russula brevipes BPL707 Standard Draft"/>
<i>
<HtmlOutputText escape="true" id="j_id52" inView="true" rendered="true" transient="false" value="( Project ID: "/>
<HtmlOutputText escape="true" id="j_id53" inView="true" rendered="true" transient="false" value="1106220"/>
<HtmlOutputText escape="true" id="j_id54" inView="true" rendered="true" transient="false" value=" )"/>
</i> </div> <div class="clear"/>
</HtmlPanel>
</HtmlPanel>
<HtmlPanel id="j_id56" inView="true" rendered="false" styleClass="no_frame portal_title" transient="false">
<HtmlPanel id="j_id57" inView="true" rendered="false" styleClass="no_frame small_paddings wrapper" transient="false">
<div class="label_form"> <b>
<HtmlOutputText escape="true" id="j_id59" inView="true" rendered="true" transient="false" value="Portal name:"/>
</b> </div> <div>
<HtmlOutputText escape="true" id="j_id61" inView="true" rendered="false" transient="false" value="Russula brevipes BPL707 Standard Draft"/>
</div> <div class="clear"/>
</HtmlPanel>
</HtmlPanel>
<HtmlPanel id="j_id63" inView="true" rendered="true" styleClass="no_frame small_paddings wrapper" transient="false">
<div class="label_form"> <b>
<HtmlOutputText escape="true" id="j_id65" inView="true" rendered="true" transient="false" value="Product:"/>
</b> </div> <div>
<HtmlOutputText escape="true" id="j_id67" inView="true" rendered="true" transient="false" value="Fungal Standard Draft Genome Assembly"/>
</div>
</HtmlPanel>
<HtmlPanel id="j_id69" inView="true" rendered="true" styleClass="no_frame small_paddings" transient="false">
<div class="label_form"> <b>
<HtmlOutputText escape="true" id="j_id71" inView="true" rendered="true" transient="false" value="Proposal Name: "/>
</b> </div> <div>
<HtmlOutputText escape="true" id="j_id73" inView="true" rendered="true" transient="false" value="1KFG: Deep Sequencing of Ecologically-relevant Dikarya"/>
<i>
<HtmlOutputText escape="true" id="j_id75" inView="true" rendered="true" transient="false" value="(Proposal ID: "/>
<HtmlOutputLink disabled="false" id="j_id76" inView="true" rendered="true" target="_self" transient="false" value="../1KFDeerelDikarya">
<HtmlOutputText escape="true" id="j_id77" inView="true" rendered="true" style="background-color: #d9ffcf" transient="false" value="1974"/>
</HtmlOutputLink>
<HtmlOutputText escape="true" id="j_id78" inView="true" rendered="false" transient="false" value=", "/>
<HtmlOutputLink disabled="false" id="j_id79" inView="true" rendered="false" target="_self" transient="false" value="../lookup?keyName=proposalId&keyValue=1974&app=Access&groupOnly=1">
Proposal Level Access Control
</HtmlOutputLink>
<HtmlOutputText escape="true" id="j_id81" inView="true" rendered="true" transient="false" value=")"/>
</i> </div>
</HtmlPanel>
<HtmlPanel id="j_id83" inView="true" rendered="false" styleClass="no_frame small_paddings" transient="false">
<div class="label_form"> <b>
<HtmlOutputText escape="true" id="j_id85" inView="true" rendered="true" transient="false" value="Proposal Name: "/>
</b> </div> <div>
<HtmlOutputText escape="true" id="j_id87" inView="true" rendered="true" transient="false" value="1KFG: Deep Sequencing of Ecologically-relevant Dikarya"/>
<i>
<HtmlOutputText escape="true" id="j_id89" inView="true" rendered="true" transient="false" value="(Proposal ID: "/>
<HtmlOutputLink disabled="false" id="j_id90" inView="true" rendered="true" target="_self" transient="false" value="../1KFDeerelDikarya">
<HtmlOutputText escape="true" id="j_id91" inView="true" rendered="true" style="background-color: #d9ffcf" transient="false" value="1974"/>
</HtmlOutputLink>
<HtmlOutputText escape="true" id="j_id92" inView="true" rendered="false" transient="false" value=" / "/>
<HtmlOutputText escape="true" id="j_id93" inView="true" rendered="false" transient="false" value=", "/>
<HtmlOutputLink disabled="false" id="j_id94" inView="true" rendered="false" target="_self" transient="false" value="../lookup?keyName=proposalId&keyValue=1974&app=Access&groupOnly=1">
Proposal Level Access Control
</HtmlOutputLink>
<HtmlOutputText escape="true" id="j_id96" inView="true" rendered="true" transient="false" value=")"/>
</i> </div>
</HtmlPanel>
<HtmlPanel id="j_id98" inView="true" rendered="false" styleClass="no_frame small_paddings wrapper" transient="false">
<div class="label_form"> <b>
<HtmlOutputText escape="true" id="j_id100" inView="true" rendered="true" transient="false" value="Proposal PI: "/>
</b> </div>
</HtmlPanel>
<HtmlPanel id="j_id102" inView="true" rendered="true" styleClass="no_frame small_paddings wrapper" transient="false">
<div class="label_form"> <b>
<HtmlOutputText escape="true" id="j_id104" inView="true" rendered="true" transient="false" value="Project PI: "/>
</b> </div>
</HtmlPanel>
<HtmlPanel id="j_id106" inView="true" rendered="true" styleClass="no_frame" transient="false">
<div>
<HtmlOutputLink disabled="false" id="j_id108" inView="true" rendered="true" target="_self" transient="false" value="mailto:[email protected]">
<HtmlOutputText escape="true" id="j_id109" inView="true" rendered="true" transient="false" value="Francis "/>
<HtmlOutputText escape="true" id="j_id110" inView="true" rendered="true" transient="false" value="Michel "/>
<HtmlOutputText escape="true" id="j_id111" inView="true" rendered="true" transient="false" value="Martin "/>
</HtmlOutputLink>
</div> <div>
<HtmlOutputLink disabled="false" id="j_id113" inView="true" rendered="false" target="_self" transient="false" value="mailto:[email protected]">
<HtmlOutputText escape="true" id="j_id114" inView="true" rendered="true" transient="false" value="Francis "/>
<HtmlOutputText escape="true" id="j_id115" inView="true" rendered="true" transient="false" value="Michel "/>
<HtmlOutputText escape="true" id="j_id116" inView="true" rendered="true" transient="false" value="Martin "/>
</HtmlOutputLink>
</div>
</HtmlPanel>
<HtmlPanel id="j_id118" inView="true" rendered="false" styleClass="no_frame small_paddings wrapper" transient="false">
<div class="label_form"> <b>
<HtmlOutputText escape="true" id="j_id120" inView="true" rendered="false" transient="false" value="All PIs: "/>
</b> </div> <div>
<HtmlOutputText escape="true" id="j_id122" inView="true" rendered="false" transient="false" value=" "/>
</div>
</HtmlPanel>
<HtmlPanel id="j_id124" inView="true" rendered="false" styleClass="no_frame small_paddings wrapper" transient="false">
<div class="label_form"> <b>
<HtmlOutputText escape="true" id="j_id126" inView="true" rendered="true" transient="false" value="Data Submitter:"/>
</b> <b>
<HtmlOutputText escape="true" id="j_id128" inView="true" rendered="false" transient="false" value="Data Submitters:"/>
</b> </div> <div>
<HtmlOutputText escape="false" id="j_id130" inView="true" rendered="true" transient="false" value=""/>
</div>
</HtmlPanel>
<HtmlPanel id="j_id132" inView="true" rendered="true" styleClass="no_frame small_paddings wrapper" transient="false">
<div class="label_form"> <b>
<HtmlOutputText escape="true" id="j_id134" inView="true" rendered="true" transient="false" value="User Program: "/>
</b> </div> <div>
<HtmlOutputText escape="true" id="j_id136" inView="true" rendered="true" transient="false" value="CSP"/>
</div>
</HtmlPanel>
<HtmlPanel id="j_id138" inView="true" rendered="true" styleClass="no_frame small_paddings wrapper" transient="false">
<div class="label_form"> <b>
<HtmlOutputText escape="true" id="j_id140" inView="true" rendered="true" transient="false" value="Program Year: "/>
</b> </div>
<HtmlOutputText escape="true" id="j_id142" inView="true" rendered="true" transient="false" value="2016"/>
</HtmlPanel>
<HtmlPanel id="j_id143" inView="true" rendered="false" styleClass="no_frame small_paddings wrapper" transient="false">
<div class="label_form"> <b>
<HtmlOutputText escape="true" id="j_id145" inView="true" rendered="true" transient="false" value="Program Year: "/>
</b> </div> <div> <i>
<HtmlOutputText escape="true" id="j_id147" inView="true" rendered="true" transient="false" value="( Funding Year: )"/>
</i> </div>
</HtmlPanel>
<HtmlPanel id="j_id149" inView="true" rendered="true" styleClass="no_frame small_paddings wrapper" transient="false">
<div class="label_form"> <b>
<HtmlOutputText escape="true" id="j_id151" inView="true" rendered="true" transient="false" value="Scientific Program:"/>
</b> </div> <div>
<HtmlOutputText escape="true" id="j_id153" inView="true" rendered="true" transient="false" value="Fungal"/>
</div>
</HtmlPanel>
<!-- if needed -->
<HtmlPanel id="j_id156" inView="true" rendered="false" styleClass="no_frame small_paddings wrapper" transient="false">
<div class="label_form"> <b>
<HtmlOutputText escape="true" id="j_id158" inView="true" rendered="true" transient="false" value="Genome Portal:"/>
</b> </div> <div> <ul class="hidden_overflow other_names">
<UIRepeat id="j_id160" inView="true" offset="0" rendered="true" size="-1" transient="false" var="portal">
<li>
<HtmlOutputText escape="false" id="homeLink" inView="true" rendered="true" transient="false"/>
</li>
</UIRepeat>
</ul> </div>
</HtmlPanel>
<HtmlPanel id="j_id164" inView="true" rendered="true" styleClass="no_frame small_paddings wrapper" transient="false">
<div class="label_form"> <b>
<HtmlOutputText escape="true" id="j_id166" inView="true" rendered="true" transient="false" value="Related Projects:"/>
</b> </div> <div>
<HtmlOutputText escape="false" id="homeLink" inView="true" rendered="true" transient="false" value=" FD <a target='_self' href='/portal/lookup?keyName=jgiProjectId&keyValue=1106219&app=Info&showParent=false'>1106219</a>; SP <a target='_self' href='/portal/lookup?keyName=jgiProjectId&keyValue=1106238&app=Info&showParent=false'>1106238</a>; SP <a target='_self' href='/portal/lookup?keyName=jgiProjectId&keyValue=1106237&app=Info&showParent=false'>1106237</a>; AP 1106220; AP <a target='_self' href='/portal/lookup?keyName=jgiProjectId&keyValue=1106221&app=Info&showParent=false'>1106221</a>; AP <a target='_self' href='/portal/lookup?keyName=jgiProjectId&keyValue=1106222&app=Info&showParent=false'>1106222</a>"/>
</div>
</HtmlPanel>
<HtmlPanel id="j_id169" inView="true" rendered="true" styleClass="no_frame small_paddings wrapper" transient="false">
<div class="label_form"> <b>
<HtmlOutputText escape="true" id="j_id171" inView="true" rendered="true" transient="false" value="Release Date:"/>
</b> </div> <div>
<HtmlOutputText escape="true" id="j_id173" inView="true" rendered="true" transient="false" value="2017-02-18"/>
</div>
</HtmlPanel>
<HtmlPanel id="j_id175" inView="true" rendered="false" styleClass="no_frame small_paddings wrapper" transient="false">
<div class="label_form"> <b>
<HtmlOutputText escape="true" id="j_id177" inView="true" rendered="true" transient="false" value="DOI:"/>
<HtmlOutputText escape="true" id="j_id178" inView="true" rendered="false" transient="false" value="Award DOI:"/>
</b> </div> <div>
<HtmlOutputText escape="true" id="j_id180" inView="true" rendered="true" transient="false"/>
</div>
</HtmlPanel>
<HtmlPanel id="j_id182" inView="true" rendered="false" styleClass="no_frame small_paddings wrapper" transient="false">
<div class="label_form"> <b>
<HtmlOutputText escape="true" id="j_id184" inView="true" rendered="true" transient="false" value="EMSL data portal:"/>
</b> </div> <div>
<HtmlOutputLink disabled="false" id="j_id186" inView="true" rendered="true" target="_blank" transient="false" value="https://www.emsl.pnnl.gov/project/">
<HtmlOutputText escape="true" id="j_id187" inView="true" rendered="true" transient="false" value="https://www.emsl.pnnl.gov/project/"/>
</HtmlOutputLink>
</div>
</HtmlPanel>
</div> </div> </div>
</HtmlAjaxOutputPanel>
</HtmlAjaxOutputPanel>
</HtmlAjaxOutputPanel>
<fieldset><legend>Organism</legend> <div class="i">
<HtmlOutputLabel escape="true" for="v1" id="j_id191" inView="true" rendered="true" transient="false" value="Genus species strain:"/>
<HtmlOutputText escape="true" id="v1" inView="true" rendered="true" styleClass="v" transient="false" value="Made up of Display Name + Aliases."/>
</div> <div class="i">
<HtmlOutputLabel escape="true" for="v2" id="j_id193" inView="true" rendered="true" transient="false" value="JGI project id:"/>
<HtmlInputText disabled="false" id="v2" immediate="false" inView="true" localValueSet="false" maxlength="-2147483648" readonly="false" rendered="true" required="false" size="-2147483648" transient="false" valid="true" value="1106220"/>
</div> <div class="i">
<HtmlOutputLabel escape="true" for="v3" id="j_id195" inView="true" rendered="true" transient="false" value="Culture collection:"/>
<HtmlInputText disabled="false" id="v3" immediate="false" inView="true" localValueSet="false" maxlength="-2147483648" readonly="false" rendered="true" required="false" size="-2147483648" transient="false" valid="true"/>
</div> <div class="i">
<HtmlOutputLabel escape="true" for="v4" id="j_id197" inView="true" rendered="true" transient="false" value="Year of funding:"/>
<HtmlInputText disabled="false" id="v4" immediate="false" inView="true" localValueSet="false" maxlength="-2147483648" readonly="false" rendered="true" required="false" size="-2147483648" transient="false" valid="true"/>
</div>
<UIRepeat id="j_id199" inView="true" offset="0" rendered="false" size="-1" transient="false" var="foo">
<div class="i">
<HtmlOutputLabel escape="true" for="v5" id="j_id201" inView="true" rendered="true" transient="false" value="Genomic DNA prepared by:"/>
<HtmlInputText disabled="false" id="v5" immediate="false" inView="true" localValueSet="false" maxlength="-2147483648" readonly="false" rendered="true" required="false" size="-2147483648" transient="false" valid="true" value=""/>
</div>
</UIRepeat>
<div class="i">
<HtmlOutputLabel escape="true" for="v6" id="j_id204" inView="true" rendered="true" transient="false" value="Data Release:"/>
<HtmlInputText disabled="false" id="v6" immediate="false" inView="true" localValueSet="false" maxlength="-2147483648" readonly="false" rendered="true" required="false" size="-2147483648" transient="false" valid="true" value=""/>
</div> </fieldset> <fieldset><legend>Assembly</legend>
<HtmlEditor autoResize="false" dialogType="modal" height="300" id="j_id206" immediate="false" inView="true" inputElementType="textarea" localValueSet="false" readonly="false" rendered="true" required="false" style="" styleClass="" theme="advanced" transient="false" type="TinyMCE" useSeamText="false" valid="true" value="" viewMode="visual" width="650"/>
</fieldset> <fieldset><legend>Taxonomy</legend> <div class="i">
<HtmlOutputLabel escape="true" for="v7" id="j_id208" inView="true" rendered="true" transient="false" value="NCBI Tax id:"/>
<HtmlInputText disabled="false" id="v7" immediate="false" inView="true" localValueSet="false" maxlength="-2147483648" readonly="false" rendered="true" required="false" size="-2147483648" transient="false" valid="true"/>
</div> <div class="i">
<HtmlOutputLabel escape="true" for="v8" id="j_id210" inView="true" rendered="true" transient="false" value="NCBI Project ID:"/>
<HtmlInputText disabled="false" id="v8" immediate="false" inView="true" localValueSet="false" maxlength="-2147483648" readonly="false" rendered="true" required="false" size="-2147483648" transient="false" valid="true"/>
</div> <div class="i">
<HtmlOutputLabel escape="true" for="v9" id="j_id212" inView="true" rendered="true" transient="false" value="GOLD ID:"/>
<HtmlInputText disabled="false" id="v9" immediate="false" inView="true" localValueSet="false" maxlength="-2147483648" readonly="false" rendered="true" required="false" size="-2147483648" transient="false" valid="true"/>
</div> <div class="i">
<HtmlOutputLabel escape="true" for="v10" id="j_id214" inView="true" rendered="true" transient="false" value="Lineage:"/>
<HtmlOutputText escape="true" id="v10" inView="true" rendered="true" styleClass="v" transient="false" value="Not editable because it is derived from tax id."/>
</div> </fieldset> <fieldset><legend>Other Names</legend> <div class="i">
<HtmlOutputLabel escape="true" for="v12" id="j_id216" inView="true" rendered="true" transient="false" value="Name History:"/>
<HtmlInputTextarea cols="-2147483648" disabled="false" id="v12" immediate="false" inView="true" localValueSet="false" readonly="false" rendered="true" required="false" rows="-2147483648" transient="false" valid="true"/>
</div> <div class="i">
<HtmlOutputLabel escape="true" for="v13" id="j_id218" inView="true" rendered="true" transient="false" value="Synonyms (aliases):"/>
<HtmlInputTextarea cols="-2147483648" disabled="false" id="v13" immediate="false" inView="true" localValueSet="false" readonly="false" rendered="true" required="false" rows="-2147483648" transient="false" valid="true"/>
</div> </fieldset> <fieldset><legend>Contacts - JGI</legend>
<HtmlInputTextarea cols="-2147483648" disabled="false" id="v14" immediate="false" inView="true" localValueSet="false" readonly="false" rendered="true" required="false" rows="-2147483648" style="width:650px" transient="false" valid="true"/>
</fieldset> <fieldset><legend>Contacts - Collaborators</legend>
<HtmlEditor autoResize="false" dialogType="modal" height="300" id="j_id221" immediate="false" inView="true" inputElementType="textarea" localValueSet="false" readonly="false" rendered="true" required="false" style="" styleClass="" theme="advanced" transient="false" type="TinyMCE" useSeamText="false" valid="true" value="" viewMode="visual" width="650"/>
</fieldset> <fieldset><legend>Contacts - Request DNA</legend>
<HtmlEditor autoResize="false" dialogType="modal" height="300" id="j_id223" immediate="false" inView="true" inputElementType="textarea" localValueSet="false" readonly="false" rendered="true" required="false" style="" styleClass="" theme="advanced" transient="false" type="TinyMCE" useSeamText="false" valid="true" value="" viewMode="visual" width="650"/>
</fieldset> <fieldset><legend>Interesting Sites</legend>
<HtmlEditor autoResize="false" dialogType="modal" height="300" id="j_id225" immediate="false" inView="true" inputElementType="textarea" localValueSet="false" readonly="false" rendered="true" required="false" style="" styleClass="" theme="advanced" transient="false" type="TinyMCE" useSeamText="false" valid="true" value="" viewMode="visual" width="650"/>
</fieldset> <fieldset><legend>General Information</legend>
<HtmlEditor autoResize="false" dialogType="modal" height="300" id="j_id227" immediate="false" inView="true" inputElementType="textarea" localValueSet="false" readonly="false" rendered="true" required="false" style="" styleClass="" theme="advanced" transient="false" type="TinyMCE" useSeamText="false" valid="true" value="" viewMode="visual" width="650"/>
</fieldset> <fieldset><legend>Publication</legend> <div class="i">
<HtmlOutputLabel escape="true" for="v15" id="j_id229" inView="true" rendered="true" transient="false" value="Paper:"/>
<HtmlInputTextarea cols="-2147483648" disabled="false" id="v15" immediate="false" inView="true" localValueSet="false" readonly="false" rendered="true" required="false" rows="-2147483648" transient="false" valid="true"/>
<!-- h:inputTextarea id="v15" value="#{genericContentBean.properties.publication}" /--> </div> <div class="i">
<HtmlOutputLabel escape="true" for="v16" id="j_id231" inView="true" rendered="true" transient="false" value="Authors:"/>
<HtmlInputTextarea cols="-2147483648" disabled="false" id="v16" immediate="false" inView="true" localValueSet="false" readonly="false" rendered="true" required="false" rows="-2147483648" transient="false" valid="true"/>
</div> <div class="i">
<HtmlOutputLabel escape="true" for="v17" id="j_id233" inView="true" rendered="true" transient="false" value="JGI Authors:"/>
<HtmlInputTextarea cols="-2147483648" disabled="false" id="v17" immediate="false" inView="true" localValueSet="false" readonly="false" rendered="true" required="false" rows="-2147483648" transient="false" valid="true"/>
</div> </fieldset> <fieldset><legend>Funding</legend>
<HtmlEditor autoResize="false" dialogType="modal" height="300" id="j_id235" immediate="false" inView="true" inputElementType="textarea" localValueSet="false" readonly="false" rendered="true" required="false" style="" styleClass="" theme="advanced" transient="false" type="TinyMCE" useSeamText="false" valid="true" value="The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231." viewMode="visual" width="650"/>
</fieldset>
</HtmlAjaxOutputPanel>
<div id="save_confirmation" style="display: none;" title="Save changes?"> <p class="confirmation_dialog"> Please confirm that you want to SAVE all your changes for <b>'#{genericContentBean.organismDisplayName}'</b>. </p> </div> <div id="cancel_confirmation" style="display: none;" title="Discard changes?"> <p class="confirmation_dialog"> Please confirm that you want to DISCARD all your changes for <b>'#{genericContentBean.organismDisplayName}'</b>. </p> </div>
</HtmlForm>
<HtmlAjaxOutputPanel ajaxRendered="false" id="j_id238" inView="true" keepTransient="true" layout="inline" rendered="true" transient="false">
<HtmlAjaxOutputPanel ajaxRendered="false" id="j_id239" inView="true" keepTransient="true" layout="inline" rendered="true" styleClass="analysis_project" transient="false">
<HtmlAjaxOutputPanel ajaxRendered="false" id="j_id240" inView="true" keepTransient="true" layout="inline" rendered="true" styleClass="" transient="false">
<HtmlAjaxOutputPanel ajaxRendered="false" id="j_id241" inView="true" keepTransient="true" layout="inline" rendered="true" styleClass="no_frame" transient="false">
<div style="font-size: 1.15em;"> <div class="genome_properties"> <div class="sub_section">
<HtmlPanel id="j_id243" inView="true" rendered="false" styleClass="no_frame" transient="false">
<div class="label_form"> <b>
<HtmlOutputText escape="true" id="j_id245" inView="true" rendered="true" transient="false" value="Group Name: "/>
</b> </div> <div>
<HtmlOutputText escape="true" id="j_id247" inView="true" rendered="false" transient="false" value="Russula brevipes BPL707 Standard Draft"/>
</div>
</HtmlPanel>
<HtmlPanel id="j_id249" inView="true" rendered="true" styleClass="no_frame portal_title" transient="false">
<HtmlPanel id="j_id250" inView="true" rendered="true" styleClass="no_frame small_paddings wrapper" transient="false">
<div class="label_form"> <b>
<HtmlOutputText escape="true" id="j_id252" inView="true" rendered="false" transient="false" value="Project name:"/>
<HtmlOutputText escape="true" id="j_id253" inView="true" rendered="true" transient="false" value="Analysis Project name:"/>
<HtmlOutputText escape="true" id="j_id254" inView="true" rendered="false" transient="false" value="Seq. Project name:"/>
</b> </div> <div>
<HtmlOutputText escape="true" id="j_id256" inView="true" rendered="true" transient="false" value="Russula brevipes BPL707 Standard Draft"/>
<HtmlOutputText escape="true" id="j_id257" inView="true" rendered="false" transient="false" value="Russula brevipes BPL707 Standard Draft"/>
<i>
<HtmlOutputText escape="true" id="j_id259" inView="true" rendered="true" transient="false" value="( Project ID: "/>
<HtmlOutputText escape="true" id="j_id260" inView="true" rendered="true" transient="false" value="1106220"/>
<HtmlOutputText escape="true" id="j_id261" inView="true" rendered="true" transient="false" value=" )"/>
</i> </div> <div class="clear"/>
</HtmlPanel>
</HtmlPanel>
<HtmlPanel id="j_id263" inView="true" rendered="false" styleClass="no_frame portal_title" transient="false">
<HtmlPanel id="j_id264" inView="true" rendered="false" styleClass="no_frame small_paddings wrapper" transient="false">
<div class="label_form"> <b>
<HtmlOutputText escape="true" id="j_id266" inView="true" rendered="true" transient="false" value="Portal name:"/>
</b> </div> <div>
<HtmlOutputText escape="true" id="j_id268" inView="true" rendered="false" transient="false" value="Russula brevipes BPL707 Standard Draft"/>
</div> <div class="clear"/>
</HtmlPanel>
</HtmlPanel>
<HtmlPanel id="j_id270" inView="true" rendered="true" styleClass="no_frame small_paddings wrapper" transient="false">
<div class="label_form"> <b>
<HtmlOutputText escape="true" id="j_id272" inView="true" rendered="true" transient="false" value="Product:"/>
</b> </div> <div>
<HtmlOutputText escape="true" id="j_id274" inView="true" rendered="true" transient="false" value="Fungal Standard Draft Genome Assembly"/>
</div>
</HtmlPanel>
<HtmlPanel id="j_id276" inView="true" rendered="true" styleClass="no_frame small_paddings" transient="false">
<div class="label_form"> <b>
<HtmlOutputText escape="true" id="j_id278" inView="true" rendered="true" transient="false" value="Proposal Name: "/>
</b> </div> <div>
<HtmlOutputText escape="true" id="j_id280" inView="true" rendered="true" transient="false" value="1KFG: Deep Sequencing of Ecologically-relevant Dikarya"/>
<i>
<HtmlOutputText escape="true" id="j_id282" inView="true" rendered="true" transient="false" value="(Proposal ID: "/>
<HtmlOutputLink disabled="false" id="j_id283" inView="true" rendered="true" target="_self" transient="false" value="../1KFDeerelDikarya">
<HtmlOutputText escape="true" id="j_id284" inView="true" rendered="true" style="background-color: #d9ffcf" transient="false" value="1974"/>
</HtmlOutputLink>
<HtmlOutputText escape="true" id="j_id285" inView="true" rendered="false" transient="false" value=", "/>
<HtmlOutputLink disabled="false" id="j_id286" inView="true" rendered="false" target="_self" transient="false" value="../lookup?keyName=proposalId&keyValue=1974&app=Access&groupOnly=1">
Proposal Level Access Control
</HtmlOutputLink>
<HtmlOutputText escape="true" id="j_id288" inView="true" rendered="true" transient="false" value=")"/>
</i> </div>
</HtmlPanel>
<HtmlPanel id="j_id290" inView="true" rendered="false" styleClass="no_frame small_paddings" transient="false">
<div class="label_form"> <b>
<HtmlOutputText escape="true" id="j_id292" inView="true" rendered="true" transient="false" value="Proposal Name: "/>
</b> </div> <div>
<HtmlOutputText escape="true" id="j_id294" inView="true" rendered="true" transient="false" value="1KFG: Deep Sequencing of Ecologically-relevant Dikarya"/>
<i>
<HtmlOutputText escape="true" id="j_id296" inView="true" rendered="true" transient="false" value="(Proposal ID: "/>
<HtmlOutputLink disabled="false" id="j_id297" inView="true" rendered="true" target="_self" transient="false" value="../1KFDeerelDikarya">
<HtmlOutputText escape="true" id="j_id298" inView="true" rendered="true" style="background-color: #d9ffcf" transient="false" value="1974"/>
</HtmlOutputLink>
<HtmlOutputText escape="true" id="j_id299" inView="true" rendered="false" transient="false" value=" / "/>
<HtmlOutputText escape="true" id="j_id300" inView="true" rendered="false" transient="false" value=", "/>
<HtmlOutputLink disabled="false" id="j_id301" inView="true" rendered="false" target="_self" transient="false" value="../lookup?keyName=proposalId&keyValue=1974&app=Access&groupOnly=1">
Proposal Level Access Control
</HtmlOutputLink>
<HtmlOutputText escape="true" id="j_id303" inView="true" rendered="true" transient="false" value=")"/>
</i> </div>
</HtmlPanel>
<HtmlPanel id="j_id305" inView="true" rendered="false" styleClass="no_frame small_paddings wrapper" transient="false">
<div class="label_form"> <b>
<HtmlOutputText escape="true" id="j_id307" inView="true" rendered="true" transient="false" value="Proposal PI: "/>
</b> </div>
</HtmlPanel>
<HtmlPanel id="j_id309" inView="true" rendered="true" styleClass="no_frame small_paddings wrapper" transient="false">
<div class="label_form"> <b>
<HtmlOutputText escape="true" id="j_id311" inView="true" rendered="true" transient="false" value="Project PI: "/>
</b> </div>
</HtmlPanel>
<HtmlPanel id="j_id313" inView="true" rendered="true" styleClass="no_frame" transient="false">
<div>
<HtmlOutputLink disabled="false" id="j_id315" inView="true" rendered="true" target="_self" transient="false" value="mailto:[email protected]">
<HtmlOutputText escape="true" id="j_id316" inView="true" rendered="true" transient="false" value="Francis "/>
<HtmlOutputText escape="true" id="j_id317" inView="true" rendered="true" transient="false" value="Michel "/>
<HtmlOutputText escape="true" id="j_id318" inView="true" rendered="true" transient="false" value="Martin "/>
</HtmlOutputLink>
</div> <div>
<HtmlOutputLink disabled="false" id="j_id320" inView="true" rendered="false" target="_self" transient="false" value="mailto:[email protected]">
<HtmlOutputText escape="true" id="j_id321" inView="true" rendered="true" transient="false" value="Francis "/>
<HtmlOutputText escape="true" id="j_id322" inView="true" rendered="true" transient="false" value="Michel "/>
<HtmlOutputText escape="true" id="j_id323" inView="true" rendered="true" transient="false" value="Martin "/>
</HtmlOutputLink>
</div>
</HtmlPanel>
<HtmlPanel id="j_id325" inView="true" rendered="false" styleClass="no_frame small_paddings wrapper" transient="false">
<div class="label_form"> <b>
<HtmlOutputText escape="true" id="j_id327" inView="true" rendered="false" transient="false" value="All PIs: "/>
</b> </div> <div>
<HtmlOutputText escape="true" id="j_id329" inView="true" rendered="false" transient="false" value=" "/>
</div>
</HtmlPanel>
<HtmlPanel id="j_id331" inView="true" rendered="false" styleClass="no_frame small_paddings wrapper" transient="false">
<div class="label_form"> <b>
<HtmlOutputText escape="true" id="j_id333" inView="true" rendered="true" transient="false" value="Data Submitter:"/>
</b> <b>
<HtmlOutputText escape="true" id="j_id335" inView="true" rendered="false" transient="false" value="Data Submitters:"/>
</b> </div> <div>
<HtmlOutputText escape="false" id="j_id337" inView="true" rendered="true" transient="false" value=""/>
</div>
</HtmlPanel>
<HtmlPanel id="j_id339" inView="true" rendered="true" styleClass="no_frame small_paddings wrapper" transient="false">
<div class="label_form"> <b>
<HtmlOutputText escape="true" id="j_id341" inView="true" rendered="true" transient="false" value="User Program: "/>
</b> </div> <div>
<HtmlOutputText escape="true" id="j_id343" inView="true" rendered="true" transient="false" value="CSP"/>
</div>
</HtmlPanel>
<HtmlPanel id="j_id345" inView="true" rendered="true" styleClass="no_frame small_paddings wrapper" transient="false">
<div class="label_form"> <b>
<HtmlOutputText escape="true" id="j_id347" inView="true" rendered="true" transient="false" value="Program Year: "/>
</b> </div>
<HtmlOutputText escape="true" id="j_id349" inView="true" rendered="true" transient="false" value="2016"/>
</HtmlPanel>
<HtmlPanel id="j_id350" inView="true" rendered="false" styleClass="no_frame small_paddings wrapper" transient="false">
<div class="label_form"> <b>
<HtmlOutputText escape="true" id="j_id352" inView="true" rendered="true" transient="false" value="Program Year: "/>
</b> </div> <div> <i>
<HtmlOutputText escape="true" id="j_id354" inView="true" rendered="true" transient="false" value="( Funding Year: )"/>
</i> </div>
</HtmlPanel>
<HtmlPanel id="j_id356" inView="true" rendered="true" styleClass="no_frame small_paddings wrapper" transient="false">
<div class="label_form"> <b>
<HtmlOutputText escape="true" id="j_id358" inView="true" rendered="true" transient="false" value="Scientific Program:"/>
</b> </div> <div>
<HtmlOutputText escape="true" id="j_id360" inView="true" rendered="true" transient="false" value="Fungal"/>
</div>
</HtmlPanel>
<!-- if needed -->
<HtmlPanel id="j_id363" inView="true" rendered="false" styleClass="no_frame small_paddings wrapper" transient="false">
<div class="label_form"> <b>
<HtmlOutputText escape="true" id="j_id365" inView="true" rendered="true" transient="false" value="Genome Portal:"/>
</b> </div> <div> <ul class="hidden_overflow other_names">
<UIRepeat id="j_id367" inView="true" offset="0" rendered="true" size="-1" transient="false" var="portal">
<li>
<HtmlOutputText escape="false" id="homeLink" inView="true" rendered="true" transient="false"/>
</li>
</UIRepeat>
</ul> </div>
</HtmlPanel>
<HtmlPanel id="j_id371" inView="true" rendered="true" styleClass="no_frame small_paddings wrapper" transient="false">
<div class="label_form"> <b>
<HtmlOutputText escape="true" id="j_id373" inView="true" rendered="true" transient="false" value="Related Projects:"/>
</b> </div> <div>
<HtmlOutputText escape="false" id="homeLink" inView="true" rendered="true" transient="false" value=" FD <a target='_self' href='/portal/lookup?keyName=jgiProjectId&keyValue=1106219&app=Info&showParent=false'>1106219</a>; SP <a target='_self' href='/portal/lookup?keyName=jgiProjectId&keyValue=1106238&app=Info&showParent=false'>1106238</a>; SP <a target='_self' href='/portal/lookup?keyName=jgiProjectId&keyValue=1106237&app=Info&showParent=false'>1106237</a>; AP 1106220; AP <a target='_self' href='/portal/lookup?keyName=jgiProjectId&keyValue=1106221&app=Info&showParent=false'>1106221</a>; AP <a target='_self' href='/portal/lookup?keyName=jgiProjectId&keyValue=1106222&app=Info&showParent=false'>1106222</a>"/>
</div>
</HtmlPanel>
<HtmlPanel id="j_id376" inView="true" rendered="true" styleClass="no_frame small_paddings wrapper" transient="false">
<div class="label_form"> <b>
<HtmlOutputText escape="true" id="j_id378" inView="true" rendered="true" transient="false" value="Release Date:"/>
</b> </div> <div>
<HtmlOutputText escape="true" id="j_id380" inView="true" rendered="true" transient="false" value="2017-02-18"/>
</div>
</HtmlPanel>
<HtmlPanel id="j_id382" inView="true" rendered="false" styleClass="no_frame small_paddings wrapper" transient="false">
<div class="label_form"> <b>
<HtmlOutputText escape="true" id="j_id384" inView="true" rendered="true" transient="false" value="DOI:"/>
<HtmlOutputText escape="true" id="j_id385" inView="true" rendered="false" transient="false" value="Award DOI:"/>
</b> </div> <div>
<HtmlOutputText escape="true" id="j_id387" inView="true" rendered="true" transient="false"/>
</div>
</HtmlPanel>
<HtmlPanel id="j_id389" inView="true" rendered="false" styleClass="no_frame small_paddings wrapper" transient="false">
<div class="label_form"> <b>
<HtmlOutputText escape="true" id="j_id391" inView="true" rendered="true" transient="false" value="EMSL data portal:"/>
</b> </div> <div>
<HtmlOutputLink disabled="false" id="j_id393" inView="true" rendered="true" target="_blank" transient="false" value="https://www.emsl.pnnl.gov/project/">
<HtmlOutputText escape="true" id="j_id394" inView="true" rendered="true" transient="false" value="https://www.emsl.pnnl.gov/project/"/>
</HtmlOutputLink>
</div>
</HtmlPanel>
</div> </div> </div>
</HtmlAjaxOutputPanel>
</HtmlAjaxOutputPanel>
</HtmlAjaxOutputPanel>
<div class="info">
<HtmlAjaxRepeat componentState="org.ajax4jsf.component.SequenceDataAdaptor$1@16c4730d" first="0" id="j_id398" inView="true" rendered="true" rowIndex="0" rowStatePreserved="false" rows="0" transient="false" var="image">
<div class="picture">
<HtmlGraphicImage alt="" id="j_id400" inView="true" ismap="false" rendered="false" transient="false" url="" value=""/>
<HtmlGraphicImage alt="Photo of Russula brevipes BPL707 Standard Draft" id="j_id401" inView="true" ismap="false" rendered="true" transient="false" url="" value=""/>
<div class="caption">
<HtmlOutputText escape="false" id="j_id403" inView="true" rendered="true" transient="false"/>
</div> </div>
</HtmlAjaxRepeat>
<HtmlAjaxOutputPanel ajaxRendered="false" id="j_id405" inView="true" keepTransient="true" layout="inline" rendered="true" transient="false">
<HtmlPanel id="j_id406" inView="true" rendered="true" styleClass="no_frame" transient="false">
<table class="genome_properties"> <tr class="header_row"> <th class="genome_properties_header">Organism</th> <td/> </tr> <tr>
<HtmlPanel id="j_id408" inView="true" rendered="true" styleClass="no_frame" transient="false">
<th>
<HtmlOutputText escape="true" id="j_id410" inView="true" rendered="false" transient="false" value="Genus/species/strain/isolate:"/>
</th> <td>
<HtmlOutputText escape="false" id="j_id412" inView="true" rendered="false" title="genus" transient="false" value=" / "/>
<HtmlOutputText escape="false" id="j_id413" inView="true" rendered="false" title="species" transient="false" value=" / "/>
<HtmlOutputText escape="false" id="j_id414" inView="true" rendered="false" title="strain" transient="false" value=" / "/>
<HtmlOutputText escape="false" id="j_id415" inView="true" rendered="false" title="genus" transient="false"/>
</td>
</HtmlPanel>
</tr> <tr>
<HtmlPanel id="j_id418" inView="true" rendered="true" styleClass="no_frame" transient="false">
<th>Name:</th> <td>
<HtmlOutputText escape="true" id="j_id420" inView="true" rendered="true" transient="false" value="Russula brevipes BPL707 Standard Draft"/>
<HtmlOutputText escape="true" id="j_id421" inView="true" rendered="false" transient="false" value="Russula brevipes BPL707 Standard Draft"/>
</td>
</HtmlPanel>
</tr> <tr>
<HtmlPanel id="j_id424" inView="true" rendered="false" styleClass="no_frame" transient="false">
<th>GOLD ID:</th> <td>
<HtmlOutputLink disabled="false" id="j_id426" inView="true" rendered="true" target="_blank" transient="false" value="https://gold.jgi.doe.gov/resolver">
<UIParameter disable="false" id="j_id427" inView="true" name="id" rendered="true" transient="false"/>
<HtmlOutputText escape="true" id="j_id428" inView="true" rendered="true" transient="false"/>
</HtmlOutputLink>
</td>
</HtmlPanel>
</tr> <tr>
<HtmlPanel id="j_id431" inView="true" rendered="false" styleClass="no_frame" transient="false">
<th>Lineage:</th> <td>
<HtmlOutputText escape="true" id="j_id433" inView="true" rendered="true" transient="false"/>
</td>
</HtmlPanel>
</tr> </table>
</HtmlPanel>
<HtmlPanel id="j_id436" inView="true" rendered="false" styleClass="no_frame" transient="false">
<table class="genome_properties"> <tr class="header_row"> <th class="genome_properties_header">Metagenome</th> <td/> </tr> <tr> <th>Name:</th> <td>
<HtmlPanel id="j_id438" inView="true" rendered="false" styleClass="no_frame" transient="false">
<HtmlOutputText escape="false" id="j_id439" inView="true" rendered="true" title="genus" transient="false" value=" "/>
<HtmlOutputText escape="false" id="j_id440" inView="true" rendered="true" title="species" transient="false" value=" "/>
<HtmlOutputText escape="false" id="j_id441" inView="true" rendered="true" title="subspecies" transient="false" value=" "/>
<HtmlOutputText escape="false" id="j_id442" inView="true" rendered="true" title="strain" transient="false"/>
</HtmlPanel>
<HtmlOutputText escape="true" id="j_id443" inView="true" rendered="true" transient="false" value="Russula brevipes BPL707 Standard Draft"/>
<HtmlOutputText escape="true" id="j_id444" inView="true" rendered="false" transient="false" value="Russula brevipes BPL707 Standard Draft"/>
</td> </tr> <tr>
<HtmlPanel id="j_id446" inView="true" rendered="false" styleClass="no_frame" transient="false">
<th>GOLD ID:</th> <td>
<HtmlOutputLink disabled="false" id="j_id448" inView="true" rendered="true" target="_blank" transient="false" value="https://gold.jgi.doe.gov/resolver">
<UIParameter disable="false" id="j_id449" inView="true" name="id" rendered="true" transient="false"/>
<HtmlOutputText escape="true" id="j_id450" inView="true" rendered="true" transient="false"/>
</HtmlOutputLink>
</td>
</HtmlPanel>
</tr> <tr>
<HtmlPanel id="j_id453" inView="true" rendered="false" styleClass="no_frame" transient="false">
<th>
<HtmlOutputText escape="true" id="j_id455" inView="true" rendered="false" transient="false" value="Culture collection:"/>
</th> <td>
<HtmlOutputText escape="true" id="j_id457" inView="true" rendered="false" transient="false"/>
</td>
</HtmlPanel>
</tr> <tr>
<HtmlPanel id="j_id460" inView="true" rendered="false" styleClass="no_frame" transient="false">
<th>Ecosystem:</th> <td>
<HtmlOutputText escape="true" id="j_id462" inView="true" rendered="true" transient="false"/>
</td>
</HtmlPanel>
</tr> <tr>
<HtmlPanel id="j_id465" inView="true" rendered="false" styleClass="no_frame" transient="false">
<th>
<HtmlOutputText escape="true" id="j_id467" inView="true" rendered="false" transient="false" value="Habitat:"/>
</th> <td>
<HtmlOutputText escape="true" id="j_id469" inView="true" rendered="false" transient="false"/>
</td>
</HtmlPanel>
</tr> <tr>
<HtmlPanel id="j_id472" inView="true" rendered="false" styleClass="no_frame" transient="false">
<th>
<HtmlOutputText escape="true" id="j_id474" inView="true" rendered="false" transient="false" value="Sampling Site:"/>
</th> <td>
<HtmlOutputText escape="true" id="j_id476" inView="true" rendered="false" transient="false"/>
</td>
</HtmlPanel>
</tr> </table>
</HtmlPanel>
<HtmlPanel id="j_id479" inView="true" rendered="false" styleClass="no_frame" transient="false">
<table class="genome_properties"> <tr class="header_row"> <th class="genome_properties_header">Name</th> <td/> </tr> <tr>
<HtmlPanel id="j_id481" inView="true" rendered="false" styleClass="no_frame" transient="false">
<th>Genus/species/strain/isolate:</th> <td>
<HtmlOutputText escape="false" id="j_id483" inView="true" rendered="true" title="genus" transient="false"/>
/
<HtmlOutputText escape="false" id="j_id485" inView="true" rendered="true" title="species" transient="false"/>
/
<HtmlOutputText escape="false" id="j_id487" inView="true" rendered="true" title="strain" transient="false"/>
<HtmlOutputText escape="false" id="j_id488" inView="true" rendered="true" title="genus" transient="false"/>
/ </td>
</HtmlPanel>
</tr> <tr>
<HtmlPanel id="j_id491" inView="true" rendered="true" styleClass="no_frame" transient="false">
<th>Name:</th> <td>
<HtmlOutputText escape="true" id="j_id493" inView="true" rendered="true" transient="false" value="Russula brevipes BPL707 Standard Draft"/>
<HtmlOutputText escape="true" id="j_id494" inView="true" rendered="false" transient="false" value="Russula brevipes BPL707 Standard Draft"/>
</td>
</HtmlPanel>
</tr> </table>
</HtmlPanel>
<HtmlPanel id="j_id497" inView="true" rendered="false" styleClass="no_frame" transient="false">
<table class="genome_properties"> <tr class="header_row"> <th class="genome_properties_header">Data Submission</th> <td/> </tr>
<HtmlPanel id="genbank" inView="true" rendered="false" styleClass="no_frame" transient="false">
<tr> <th>
<HtmlOutputText escape="false" id="j_id500" inView="true" rendered="false" transient="false" value="GenBank Accession #:"/>
</th> <td>
<HtmlOutputLink disabled="false" id="j_id502" inView="true" rendered="false" transient="false" value="http://www.ncbi.nlm.nih.gov/nuccore/">
<HtmlOutputText escape="true" id="j_id503" inView="true" rendered="true" transient="false"/>
</HtmlOutputLink>
</td> </tr> <!-- commented out <rich:panel rendered="#{genericContentBean.superuser}" styleClass="no_frame"> <tr> <td></td> <td><h:outputText value="#{genericContentBean.genbankSubmissionStatus}" rendered="#{!empty genericContentBean.genbankSubmissionStatus}" escape="false" /> </td> </tr> </rich:panel> commented out-->
</HtmlPanel>
<HtmlPanel id="j_id505" inView="true" rendered="false" styleClass="no_frame" transient="false">
<tr> <th>
<HtmlOutputText escape="true" id="j_id507" inView="true" rendered="true" transient="false" value="NCBI BioProject ID:"/>
</th> <td>
<HtmlOutputLink disabled="false" id="j_id509" inView="true" rendered="true" transient="false" value="http://www.ncbi.nlm.nih.gov/bioproject/">
<UIParameter disable="false" id="j_id510" inView="true" name="term" rendered="true" transient="false"/>
<HtmlOutputText escape="true" id="j_id511" inView="true" rendered="true" transient="false"/>
</HtmlOutputLink>
</td> </tr>
</HtmlPanel>
<tr>
<HtmlPanel id="j_id514" inView="true" rendered="false" styleClass="no_frame" transient="false">
<th>NCBI Tax ID:</th> <td>
<HtmlOutputLink disabled="false" id="j_id516" inView="true" rendered="true" transient="false" value="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi">
<UIParameter disable="false" id="j_id517" inView="true" name="id" rendered="true" transient="false"/>
<HtmlOutputText escape="true" id="j_id518" inView="true" rendered="true" transient="false"/>
</HtmlOutputLink>
</td>
</HtmlPanel>
</tr> <tr> <!-- SRA information if needed -->
<HtmlPanel id="SRA" inView="true" rendered="false" styleClass="no_frame" transient="false">
<th>SRA accession:</th> <td> <ul class="hidden_overflow">
<UIRepeat id="j_id522" inView="true" offset="0" rendered="true" size="-1" transient="false" var="sra">
<li>
<HtmlOutputText escape="true" id="j_id524" inView="true" rendered="true" transient="false"/>
<HtmlOutputText escape="true" id="j_id525" inView="true" rendered="false" transient="false" value=" ()"/>
</li>
</UIRepeat>
</ul> </td>
</HtmlPanel>
</tr> </table>
</HtmlPanel>
</HtmlAjaxOutputPanel>
<HtmlPanel id="j_id529" inView="true" rendered="false" styleClass="no_frame" transient="false">
<HtmlOutputText escape="false" id="j_id530" inView="true" rendered="true" transient="false" value=""/>
<HtmlPanel id="j_id531" inView="true" rendered="true" styleClass="no_frame" transient="false">
<table class="genome_properties"> <tr> <th>
<HtmlOutputText escape="true" id="j_id533" inView="true" rendered="false" transient="false" value="Phase:"/>
</th> <td>
<HtmlOutputText escape="true" id="j_id535" inView="true" rendered="false" transient="false" value=" "/>
</td> </tr> <tr> <th>
<HtmlOutputText escape="true" id="j_id537" inView="true" rendered="false" transient="false" value="Assembly date:"/>
</th> <td>
<HtmlOutputText escape="true" id="j_id539" inView="true" rendered="false" transient="false" value=" "/>
</td> </tr> <tr> <th>
<HtmlOutputText escape="true" id="j_id541" inView="true" rendered="false" transient="false" value="Size:"/>
</th> <td>
<HtmlOutputText escape="true" id="j_id543" inView="true" rendered="false" transient="false" value=" "/>
</td> </tr> <tr> <th>
<HtmlOutputText escape="true" id="j_id545" inView="true" rendered="false" transient="false" value="Major contigs:"/>
</th> <td>
<HtmlOutputText escape="true" id="j_id547" inView="true" rendered="false" transient="false" value=" "/>
</td> </tr> <tr> <th>
<HtmlOutputText escape="true" id="j_id549" inView="true" rendered="false" transient="false" value="Coverage:"/>
</th> <td>
<HtmlOutputText escape="true" id="j_id551" inView="true" rendered="false" transient="false" value=" "/>
</td> </tr> <tr> <th>
<HtmlOutputText escape="true" id="j_id553" inView="true" rendered="false" transient="false" value="GC content:"/>
</th> <td>
<HtmlOutputText escape="true" id="j_id555" inView="true" rendered="false" transient="false" value=" "/>
</td> </tr> </table>
</HtmlPanel>
</HtmlPanel>
<table class="genome_properties"> <tr class="header_row"> <th class="genome_properties_header">Contacts</th> <td/> </tr> <tr> <th>JGI:</th> <td>
<HtmlPanel id="j_id558" inView="true" rendered="true" styleClass="no_frame" transient="false">
<HtmlAjaxOutputPanel ajaxRendered="false" id="j_id559" inView="true" keepTransient="true" layout="inline" rendered="true" transient="false">
<HtmlOutputText escape="true" id="j_id560" inView="true" rendered="false" transient="false" value="[email protected]"/>
<HtmlOutputText escape="true" id="j_id561" inView="true" rendered="false" transient="false" value="[email protected]"/>
<HtmlOutputText escape="true" id="j_id562" inView="true" rendered="false" transient="false" value="[email protected]"/>
<HtmlOutputText escape="true" id="j_id563" inView="true" rendered="false" transient="false" value="[email protected]"/>
<HtmlOutputText escape="true" id="j_id564" inView="true" rendered="true" transient="false" value="[email protected]"/>
</HtmlAjaxOutputPanel>
<HtmlOutputText escape="true" id="j_id565" inView="true" rendered="false" transient="false" value="[email protected]"/>
</HtmlPanel>
<HtmlOutputText escape="false" id="j_id566" inView="true" rendered="false" transient="false"/>
</td> </tr> <!-- <tr> <th>Collaborators:</th> <td><h:outputText value="#{genericContentBean.contents.collaborator.value}" escape="false" /> <rich:panel rendered="#{empty genericContentBean.contents.collaborator.value}" styleClass="no_frame"> <h:outputText rendered="#{!empty genericContentBean.properties.principalInvestigatorFirstName}" value="#{genericContentBean.properties.principalInvestigatorFirstName} " /> <h:outputText rendered="#{!empty genericContentBean.properties.principalInvestigatorMiddleName}" value="#{genericContentBean.properties.principalInvestigatorMiddleName} " /> <h:outputText rendered="#{!empty genericContentBean.properties.principalInvestigatorLastName}" value="#{genericContentBean.properties.principalInvestigatorLastName} " /> <h:outputText rendered="#{!empty genericContentBean.properties.principalInvestigatorEmail}" value=" <#{genericContentBean.properties.principalInvestigatorEmail}>" /> </rich:panel> </td> </tr> --> <tr>
<HtmlAjaxOutputPanel ajaxRendered="false" id="j_id568" inView="true" keepTransient="true" layout="inline" rendered="false" transient="false">
<th>Request DNA:</th> <td>
<HtmlOutputText escape="false" id="j_id570" inView="true" rendered="true" transient="false" value=""/>
<HtmlPanel id="j_id571" inView="true" rendered="true" styleClass="no_frame" transient="false">
<HtmlOutputText escape="true" id="j_id572" inView="true" rendered="true" transient="false" value="Francis "/>
<HtmlOutputText escape="true" id="j_id573" inView="true" rendered="true" transient="false" value="Michel "/>
<HtmlOutputText escape="true" id="j_id574" inView="true" rendered="true" transient="false" value="Martin "/>
<HtmlOutputText escape="true" id="j_id575" inView="true" rendered="true" transient="false" value=" <[email protected]>"/>
</HtmlPanel>
</td>
</HtmlAjaxOutputPanel>
</tr>
<HtmlPanel id="j_id578" inView="true" rendered="false" styleClass="no_frame" transient="false">
<tr> <th>Interesting Sites:</th> <td>
<HtmlOutputText escape="false" id="j_id580" inView="true" rendered="true" transient="false" value=""/>
</td> </tr>
</HtmlPanel>
<HtmlPanel id="j_id582" inView="true" rendered="false" styleClass="no_frame" transient="false">
<tr> <th>Publication:</th> <td>
<HtmlOutputText escape="false" id="j_id584" inView="true" rendered="true" transient="false"/>
</td> </tr>
</HtmlPanel>
<HtmlPanel id="j_id586" inView="true" rendered="false" styleClass="no_frame" transient="false">
<tr> <th>Authors:</th> <td>
<HtmlOutputText escape="false" id="j_id588" inView="true" rendered="true" transient="false"/>
</td> </tr>
</HtmlPanel>
<HtmlPanel id="j_id590" inView="true" rendered="false" styleClass="no_frame" transient="false">
<tr> <th>JGI Authors:</th> <td>
<HtmlOutputText escape="false" id="j_id592" inView="true" rendered="true" transient="false"/>
</td> </tr>
</HtmlPanel>
</table> <table class="genome_properties">
<HtmlPanel id="j_id595" inView="true" rendered="false" styleClass="no_frame" transient="false">
<tr class="header_row"> <th class="genome_properties_header">General Information</th> <td/> </tr> <tr> <th/> <td> <div style="top:0;vertical-align:top;height:200px;overflow-y:auto;width:100%;border: 1px solid #999; white-space:pre-wrap">
<HtmlOutputText escape="false" id="j_id597" inView="true" rendered="true" style="display:block;padding:2px;top:0;vertical-align:top;white-space:pre-wrap" transient="false" value=""/>
</div> </td> </tr>
</HtmlPanel>
</table> <table class="genome_properties"> <tr class="header_row"> <th class="genome_properties_header">Funding</th> <td/> </tr> <tr> <td colspan="2">
<HtmlOutputText escape="false" id="j_id600" inView="true" rendered="true" transient="false" value="The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231."/>
</td> </tr> </table>
<HtmlAjaxOutputPanel ajaxRendered="false" id="j_id602" inView="true" keepTransient="true" layout="none" rendered="false" transient="false">
<table class="genome_properties"> <tr class="header_row"> <th class="genome_properties_header">Groups</th> <td/> </tr> </table> This portal belongs to the following groups <table class="genomes"> <thead/> <tr> <th>##</th> <th>Name</th> <th>Type</th> </tr> <tbody>
<HtmlAjaxRepeat componentState="org.ajax4jsf.component.SequenceDataAdaptor$1@1517253e" first="0" id="j_id604" inView="true" rendered="true" rowIndex="0" rowKeyVar="index" rowStatePreserved="false" rows="0" transient="false" var="info">
<tr class="#{info.publicStatus?'public':'protected'}"> <td class="nm">#{index+1}</td> <td><a href="../#{info.name}">#{info.displayName}</a> </td> <td>
<HtmlOutputText escape="false" id="j_id606" inView="true" rendered="false" transient="false" value="Proposal"/>
</td> </tr>
</HtmlAjaxRepeat>
</tbody> </table>
</HtmlAjaxOutputPanel>
<HtmlPanel id="j_id609" inView="true" rendered="true" styleClass="no_frame" transient="false">
<table class="genome_properties"> <tr class="header_row"> <th class="genome_properties_header">Contributing Projects</th> <td/> </tr> <tr> <th>Projects:</th> <td> <ul class="hidden_overflow">
<UIRepeat id="j_id611" inView="true" offset="0" rendered="true" size="-1" transient="false" var="id">
<HtmlOutputText escape="false" id="spLink" inView="true" rendered="true" transient="false" value=" "/>
</UIRepeat>
</ul> </td> </tr> </table>
</HtmlPanel>
</div>
</HtmlAjaxOutputPanel>
<div class="clear"/>
</HtmlAjaxOutputPanel>
</HtmlAjaxOutputPanel>
</div>
<HtmlOutputText escape="false" id="j_id616" inView="true" rendered="true" transient="false" value="<!-- script for form in production--> <script type="text/javascript" src="https://issues.jgi.doe.gov/s/d41d8cd98f00b204e9800998ecf8427e-CDN/vyalq3/802003/98b099ed0399d35100f912dc1a497d3b/2.2.4.7/_/download/batch/com.atlassian.plugins.jquery:jquery/com.atlassian.plugins.jquery:jquery.js?collectorId=4c7588ab"></script><script type="text/javascript" src="https://issues.jgi.doe.gov/s/72f38e48d6774b40131164696ed4d9c4-T/vyalq3/802003/98b099ed0399d35100f912dc1a497d3b/3.0.7/_/download/batch/com.atlassian.jira.collector.plugin.jira-issue-collector-plugin:issuecollector/com.atlassian.jira.collector.plugin.jira-issue-collector-plugin:issuecollector.js?locale=en-US&collectorId=4c7588ab"></script> <script type="text/javascript" src="https://issues.jgi.doe.gov/s/d41d8cd98f00b204e9800998ecf8427e-CDN/vyalq3/802003/98b099ed0399d35100f912dc1a497d3b/2.2.4.7/_/download/batch/com.atlassian.plugins.jquery:jquery/com.atlassian.plugins.jquery:jquery.js?collectorId=bf33317f"></script><script type="text/javascript" src="https://issues.jgi.doe.gov/s/72f38e48d6774b40131164696ed4d9c4-T/vyalq3/802003/98b099ed0399d35100f912dc1a497d3b/3.0.7/_/download/batch/com.atlassian.jira.collector.plugin.jira-issue-collector-plugin:issuecollector/com.atlassian.jira.collector.plugin.jira-issue-collector-plugin:issuecollector.js?locale=en-US&collectorId=bf33317f"></script> <script type="text/javascript"> function IsEmail(email) { var regex = /^([a-zA-Z0-9_.+-])+\@(([a-zA-Z0-9-])+\.)+([a-zA-Z0-9]{2,4})+$/; return regex.test(email); } function emailCheck(e) { //var email=document.jic-collector-form.email.customfield_10556.value; var email = jQuery("#customfield_10556").val; if (!IsEmail(email)) { alert('Please input a valid email address!'); //.document.jic-collector-form.email.focus() //e.preventDefault(); return; } //var emailVerify = document.jic-collector-form.email.customfield_10903.value; var emailVerify = jQuery("#customfield_10903").val; if (email !== emailVerify) { alert('Email verification field must match email field. ' + email + ' !== ' + emailVerify); //e.preventDefault(); return; } } function InstallEmailValidationHandler() { // var v = jQuery("iframe#atlwdg-frame").contents().find("#customfield_10556"); // var frame = jQuery("iframe").contents(); var v1 = jQuery("#atlwdg-frame").contents().find("#customfield_10556"); var v2 = jQuery("#atlwdg-frame").contents().find("#customfield_10903"); v1.on('blur', emailCheck); v2.on('blur', emailCheck); } window.ATL_JQ_PAGE_PROPS = jQuery.extend(window.ATL_JQ_PAGE_PROPS, { '4c7588ab': { "triggerFunction": function(showCollectorDialog) { //Requires that jQuery is available! jQuery(".feedback").click(function(e) { e.preventDefault(); showCollectorDialog(); }); }}, 'bf33317f': { "triggerFunction": function(showCollectorDialog) { //Requires that jQuery is available! jQuery(".feature-feedback").click(function(e) { e.preventDefault(); showCollectorDialog(); }); }}}); </script> <!-- end of script --> <!-- script for form in testing FD --> <!-- <script type="text/javascript" src="https://issues.jgi.doe.gov/s/0638579675be36eb33553e191477fe46-T/en_USyqhetd/6346/86/1.4.16/_/download/batch/com.atlassian.jira.collector.plugin.jira-issue-collector-plugin:issuecollector/com.atlassian.jira.collector.plugin.jira-issue-collector-plugin:issuecollector.js?locale=en-US&collectorId=bf33317f"></script> <script type="text/javascript">window.ATL_JQ_PAGE_PROPS = { "triggerFunction": function(showCollectorDialog) { //Requires that jQuery is available! jQuery(".feedback").click(function(e) { e.preventDefault(); showCollectorDialog(); }); }};</script> --> <!-- end of script --><div class="clear"></div> <div class="wrapper"> <div class="divider divider-tall"></div> <div id="footer"> <ul class="float_left"> <li><a target="_parent" href="#" class="textlink feedback">Contact Us</a></li> <li><a target="_parent" href="http://www.jgi.doe.gov/whoweare/disclaimer.html" class="textlink">Disclaimer</a></li> </ul> <ul class="float_left"> <li><a target="_parent" href="/portal/pages/citeUs.jsf" class="textlink">Cite Us</a></li> <li><a target="_parent" href="/portal/pages/credits.jsf" class="textlink">Credits</a></li> </ul> <ul class="float_left"> <!--<li><a target="_parent" href="https://www.surveymonkey.com/r/W7783SJ" class="textlink">Survey 2017</a></li> --> <li><a target="_parent" class="textlink" href="http://www.jgi.doe.gov/whoweare/accessibility.html">Accessibility/Section 508</a></li> </ul> <div class="float_right"> <span id="doelogo"><a href="http://science.energy.gov/" target="_parent"><img src="/portal/images/DOE_logo.png" width="232" height="39" alt="DOE logo" border="0" /></a></span> </div> <div class="clear"></div> <ul> <li>© 1997-2024 The Regents of the University of California.</li> <li><span class="version">Genome Portal version:8.18.177 content:b18bcc68d4 portal-web-2.jgi.lbl.gov Release Date:12-Jun-2024 14:24:40.214 PST Current Date:25-Jul-2024 06:06:38.885 PDT</span> </li> </ul> </div> <div class="clear"></div> </div>"/>
</body> </html>
</AjaxViewRoot>

+ Scoped Variables

Request Parameters
NameValue
None
Request Attributes
NameValue
ajaxContextorg.ajax4jsf.context.AjaxContextImpl@4a065753
forwardedFrom/RusbreStandDraft_2/RusbreStandDraft_2.info.html
organismRusbreStandDraft_2
response_time_clock_start4810716236927377
scriptNameRusbreStandDraft_2.info.html
serverNamehttps://genome.jgi.doe.gov
Session Attributes
NameValue
None
Application Attributes
NameValue
csfcff[ ]
Jul 25, 2024 6:06:38 AM - Generated by Facelets