Info • Zoophthora radicans ATCC 208865 v1.0

Status

[May 2018] The Zoophthora radicans genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Zoophthora radicans ATCC 208865 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 655.20
Sequencing read coverage depth 67.4x
# of contigs 23379
# of scaffolds 8662
# of scaffolds >= 2Kbp 6939
Scaffold N50 307
Scaffold L50 (Mbp) 0.54
# of gaps 14717
% of scaffold length in gaps 3.9%
Three largest Scaffolds (Mbp) 5.69, 4.83, 4.18


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 44596 41536 93.1%
Ests est.fasta 321614993 147257290 45.8%


Gene Models FilteredModels2
length (bp) of: average median
gene 1485 1248
transcript 1243 1044
exon 368 186
intron 104 54
description:
protein length (aa) 350 280
exons per gene 3.38 2
# of gene models 14479


Collaborators

Andrii Gryganskyi, Duke University, NC

Jason Stajich, UC Riverside, CA

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Amses KR, Simmons DR, Longcore JE, Mondo SJ, Seto K, Jerônimo GH, Bonds AE, Quandt CA, Davis WJ, Chang Y, Federici BA, Kuo A, LaButti K, Pangilinan J, Andreopoulos W, Tritt A, Riley R, Hundley H, Johnson J, Lipzen A, Barry K, Lang BF, Cuomo CA, Buchler NE, Grigoriev IV, Spatafora JW, Stajich JE, James TY
Diploid-dominant life cycles characterize the early evolution of Fungi.
Proc Natl Acad Sci U S A. 2022 Sep 6;119(36):e2116841119. doi: 10.1073/pnas.2116841119

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.