Trichoderma atroviride
Please note that this organism is for archival use only. Please see the current Trichoderma atroviride v2.0 site for the latest data and information.

Status

The assembly release of whole genome shotgun reads was constructed with the JGI assembler, JAZZ.

The short summary of the 8x Trichoderma atroviride genome is as follows:

Main Genome Total Reads in the assembly: 430,655
Main Genome Total Number of Scaffolds: 50
Main Genome Total Number of Contigs: 350
Main Genome Scaffold Sequence Total: 36.1 MB
Main Genome Contig Total: 36.0 MB (->0.16% gap)
Main Genome Scaffold N/L50: 6/2.00 MB
Main Genome Contig N/L50: 46/252 KB
Main Genome Depth: 8.26 +/-0.03

The current draft release, version 1.0, includes a total of 11,100 gene models predicted and functionally annotated using the JGI annotation pipeline.

Collaborators

Links

Funding

This work was performed under the auspices of the US Department of Energy's Office of Science, Biological and Environmental Research Program, and by the University of California, Lawrence Berkeley National Laboratory under contract No. DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract No. DE-AC02-06NA25396.