Pseudo-nitzschia multiseries CLN-47

Status

Assembly v1 (October 2011) is a draft assembly of Sanger and 454 genomic reads. A total of 4890 scaffolds and 218.7 Mbp were assembled using Arachne.

Summary statistics for the Pseudo-nitzschia multiseries v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 218.73
Sequencing read coverage depth 8.79x
# of contigs 20216
# of scaffolds 4890
# of scaffolds >= 2Kbp 4828
Scaffold N50 390
Scaffold L50 (Mbp) 0.15
# of gaps 15326
% of scaffold length in gaps 8.5%
Three largest Scaffolds (Mbp) 1.17, 0.96, 0.86


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests nutrient replete ESTs 21731 19413 89.3%
Ests pooled ESTs: temp shock, senescence, L/D cycle, P- 30633 28066 91.6%
Ests pooled ESTs: Si- and Fe- 22180 14975 67.5%
Other EST_cluster_consensi 16535 11995 72.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1522 1163
transcript 1209 978
exon 509 315
intron 229 110
description:
protein length (aa) 377 298
exons per gene 2.38 2
# of gene models 19703


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.