Status
(Jul 2016) The Porodaedalea chrysoloma genome was sequenced using Illumina and PacBio technology, assembled with PBJelly, and annotated with the JGI annotation pipeline. The mitochondrial genome was assembled separately and is available in the downloads section.
Summary statistics for the Porodaedalea chrysoloma
FP-135951 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 44.69 |
| Sequencing read coverage depth | 50 |
| # of contigs | 1684 |
| # of scaffolds | 496 |
| # of scaffolds >= 2Kbp | 330 |
| Scaffold N50 | 25 |
| Scaffold L50 (Mbp) | 0.55 |
| # of gaps | 1188 |
| % of scaffold length in gaps | 7.0% |
| Three largest Scaffolds (Mbp) | 3.06, 1.62, 1.25 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | est.fasta | 101470532 | 99679139 | 98.2% |
| Other | JGI_RNA_contigs | 60218 | 58324 | 96.9% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1733 | 1478 |
| transcript | 1401 | 1164 |
| exon | 243 | 147 |
| intron | 72 | 60 |
| description: | ||
| protein length (aa) | 412 | 332 |
| exons per gene | 5.77 | 4 |
| # of gene models | 13562 |
Collaborators
Daniel L. Lindner, US Forest Service, Center for Forest Mycology Research
Joseph W. Spatafora, Oregon State University
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute is supported by the Office of Science of the U.S.
Department of Energy under Contract No. DE-AC02-05CH11231.
