Status
The genome sequence and gene models of Penicillium decumbens IBT 11843 were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on 5/31/2017. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.
Summary statistics for the Penicillium decumbens IBT 11843
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 23.94 |
| Sequencing read coverage depth | |
| # of contigs | 670 |
| # of scaffolds | 403 |
| # of scaffolds >= 2Kbp | 130 |
| Scaffold N50 | 11 |
| Scaffold L50 (Mbp) | 0.66 |
| # of gaps | 267 |
| % of scaffold length in gaps | 0.1% |
| Three largest Scaffolds (Mbp) | 1.87, 1.81, 1.68 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 2430 | 1921 |
| transcript | 2238 | 1746 |
| exon | 639 | 366 |
| intron | 79 | 60 |
| description: | ||
| protein length (aa) | 500 | 421 |
| exons per gene | 3.50 | 3 |
| # of gene models | 7149 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Nielsen JC, Grijseels S, Prigent S, Ji B, Dainat J, Nielsen KF, Frisvad JC, Workman M, Nielsen J
Global analysis of biosynthetic gene clusters reveals vast potential of secondary metabolite production in Penicillium species.
Nat Microbiol. 2017 Apr 3;2():17044. doi: 10.1038/nmicrobiol.2017.44
Nielsen JC, Grijseels S, Prigent S, Ji B, Dainat J, Nielsen KF, Frisvad JC, Workman M, Nielsen J
Global analysis of biosynthetic gene clusters reveals vast potential of secondary metabolite production in Penicillium species.
Nat Microbiol. 2017 Apr 3;2():17044. doi: 10.1038/nmicrobiol.2017.44
Funding
This project was not sequenced at the JGI.
