Status
The Nannochloropsis salina CCMP1776 genome sequence and gene models have not been determined by the JGI, but were downloaded from the Los Alamos National Laboratory (LANL) Greenhouse portal on October 31, 2019. Please note that this copy of the genome is not maintained by LANL and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.
Summary statistics for the Nannochloropsis salina CCMP1776
release are below.
Genome Assembly | |
Genome Assembly size (Mbp) | 27.76 |
Sequencing read coverage depth | |
# of contigs | 1212 |
# of scaffolds | 196 |
# of scaffolds >= 2Kbp | 188 |
Scaffold N50 | 13 |
Scaffold L50 (Mbp) | 0.83 |
# of gaps | 1016 |
% of scaffold length in gaps | 0.4% |
Three largest Scaffolds (Mbp) | 1.56, 1.46, 1.38 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 2035 | 1604 |
transcript | 1571 | 1233 |
exon | 491 | 171 |
intron | 213 | 179 |
description: | ||
protein length (aa) | 523 | 411 |
exons per gene | 3.20 | 2 |
# of gene models | 8927 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Ohan JA, Hovde BT, Zhang XL, Davenport KW, Chertkov O, Han C, Twary SN, Starkenburg SR
Nuclear Genome Assembly of the Microalga Nannochloropsis salina CCMP1776.
Microbiol Resour Announc. 2019 Oct 31;8(44):. doi: 10.1128/MRA.00750-19
Ohan JA, Hovde BT, Zhang XL, Davenport KW, Chertkov O, Han C, Twary SN, Starkenburg SR
Nuclear Genome Assembly of the Microalga Nannochloropsis salina CCMP1776.
Microbiol Resour Announc. 2019 Oct 31;8(44):. doi: 10.1128/MRA.00750-19
Links
- JGI Algae EcoGroup Portal
- JGI PhyloGroup Portals: Heterokonta Ochrophyta Eustigmatophyta
Funding
This project was not sequenced at the JGI.