Status
This genome was sequenced by Jorge MC Mondego, Marcelo F Carazzolle, Gustavo GL Costa et al. in Laboratório de Genômica e Expressão, Departamento de Genética e Evolução, Instituto de Biologia, Universidade Estadual de Campinas, CP 6109, 13083-970, Campinas - SP, Brazil (A genome survey of Moniliophthora perniciosa gives new insights into Witches' Broom Disease of cacao). Please check their data use policies.
## Notice ##
The singlet ID from NCBI maps into simpler format we made in MycoCosm. Please check mapping_singlet.txt in download page so that bring back into original ID. For example, singlet ID "singlet_01" in MycoCosm maps into "CP01-S0-000-001-D09-UC.F" in NCBI.
Summary statistics for the Moniliophthora perniciosa FA553
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 18.41 |
| Sequencing read coverage depth | 1.9x |
| # of contigs | 14868 |
| # of scaffolds | 14868 |
| # of scaffolds >= 2Kbp | 1990 |
| Scaffold N50 | 4138 |
| Scaffold L50 (Mbp) | 0.00 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.02, 0.01, 0.01 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 704 | 601 |
| transcript | 551 | 469 |
| exon | 162 | 109 |
| intron | 65 | 57 |
| description: | ||
| protein length (aa) | 184 | 156 |
| exons per gene | 3.41 | 3 |
| # of gene models | 13560 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Mondego JM, Carazzolle MF, Costa GG, Formighieri EF, Parizzi LP, Rincones J, Cotomacci C, Carraro DM, Cunha AF, Carrer H, Vidal RO, Estrela RC, García O, Thomazella DP, de Oliveira BV, Pires AB, Rio MC, Araújo MR, de Moraes MH, Castro LA, Gramacho KP, Gonçalves MS, Neto JP, Neto AG, Barbosa LV, Guiltinan MJ, Bailey BA, Meinhardt LW, Cascardo JC, Pereira GA
A genome survey of Moniliophthora perniciosa gives new insights into Witches' Broom Disease of cacao.
BMC Genomics. 2008 Nov 18;9():548. doi: 10.1186/1471-2164-9-548
Mondego JM, Carazzolle MF, Costa GG, Formighieri EF, Parizzi LP, Rincones J, Cotomacci C, Carraro DM, Cunha AF, Carrer H, Vidal RO, Estrela RC, García O, Thomazella DP, de Oliveira BV, Pires AB, Rio MC, Araújo MR, de Moraes MH, Castro LA, Gramacho KP, Gonçalves MS, Neto JP, Neto AG, Barbosa LV, Guiltinan MJ, Bailey BA, Meinhardt LW, Cascardo JC, Pereira GA
A genome survey of Moniliophthora perniciosa gives new insights into Witches' Broom Disease of cacao.
BMC Genomics. 2008 Nov 18;9():548. doi: 10.1186/1471-2164-9-548
Funding
This project was not sequenced at the JGI.
