Micromonas commoda NOUM17 (RCC 299)

Status

v3.0 (April, 2009): The finished version of Micromonas commoda RCC299 v3.0 contains 17 complete chromosomes represented telomere to telomere with a total genome size of 21 Mbp. The chromosomes have been numbered 1-17, largest to smallest.

This v3.2 annotation (Nov 2013) is improved with RNA-Seq and manual curation.

Summary statistics for the Micromonas commoda RCC299 v3.2 release are below.
Genome Assembly
Genome Assembly size (Mbp) 20.99
Sequencing read coverage depth Finished
# of contigs 17
# of scaffolds 17
# of scaffolds >= 2Kbp 17
Scaffold N50 7
Scaffold L50 (Mbp) 1.39
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.05, 1.91, 1.76


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests JGI_ESTs 28460 27552 96.8%
Other JGI_EST_cluster_consensi 4838 4458 92.1%


Gene Models MBARI_models
length (bp) of: average median
gene 1893 1501
transcript 1812 1425
exon 1182 852
intron 154 133
description:
protein length (aa) 554 429
exons per gene 1.53 1
# of gene models 10262


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.