Info • Malassezia sympodialis ATCC 42132

Status

This genome was sequenced by Annika Scheynius ([email protected]) et al. in Department of Medicine, Solna, Karolinska Institutet, Stockholm, Sweden (Genomic insights into the atopic eczema-associated skin commensal yeast Malassezia sympodialis). Please check their data use policies.

Summary statistics for the Malassezia sympodialis ATCC 42132 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 7.67
Sequencing read coverage depth 60x (454), 200x (HiSeq)
# of contigs 87
# of scaffolds 65
# of scaffolds >= 2Kbp 40
Scaffold N50 6
Scaffold L50 (Mbp) 0.51
# of gaps 22
% of scaffold length in gaps 0.2%
Three largest Scaffolds (Mbp) 0.81, 0.75, 0.75


Gene Models ExternalModels
length (bp) of: average median
gene 1593 1332
transcript 1530 1278
exon 772 402
intron 66 31
description:
protein length (aa) 510 426
exons per gene 1.98 2
# of gene models 3517


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Gioti A, Nystedt B, Li W, Xu J, Andersson A, Averette AF, Münch K, Wang X, Kappauf C, Kingsbury JM, Kraak B, Walker LA, Johansson HJ, Holm T, Lehtiö J, Stajich JE, Mieczkowski P, Kahmann R, Kennell JC, Cardenas ME, Lundeberg J, Saunders CW, Boekhout T, Dawson TL, Munro CA, de Groot PW, Butler G, Heitman J, Scheynius A
Genomic insights into the atopic eczema-associated skin commensal yeast Malassezia sympodialis.
mBio. 2013 Jan 22;4(1):e00572-12. doi: 10.1128/mBio.00572-12

Funding

This project was not sequenced at the JGI.