Lobosporangium transversale NRRL 3116 v1.0
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Status

[Feb 2016] The Lobosporangium transversale NRRL 3116 genome was sequenced using the PacBio platform and assembled together with Falcon version 0.3.0 and improved with finisherSC version 2.0 (Lam et al., 2014), then polished with Quiver version smrtanalysis_2.3.0.140936 (Chin et al., 2013). Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Lobosporangium transversale v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 42.77
Sequencing read coverage depth 195.5x
# of contigs 138
# of scaffolds 138
# of scaffolds >= 2Kbp 137
Scaffold N50 22
Scaffold L50 (Mbp) 0.67
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.85, 1.79, 1.73


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 25094 23916 95.3%
Ests est.fasta 99958202 98485387 98.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 2013 1714
transcript 1573 1290
exon 411 227
intron 157 119
description:
protein length (aa) 469 371
exons per gene 3.83 3
# of gene models 11822


Collaborators

Jason Stajich, UC Riverside, California

Joey Spatafora, Oregon State, Oregon

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.