Hexagonia nitida CIRM-BRFM 1802 v1.0

Status

[August 2017] The Hexagonia nitida CIRM-BRFM 1802 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Hexagonia nitida v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 41.83
Sequencing read coverage depth 127.16x
# of contigs 33
# of scaffolds 33
# of scaffolds >= 2Kbp 32
Scaffold N50 6
Scaffold L50 (Mbp) 3.19
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.88, 4.15, 3.64


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 92305 88836 96.2%
Ests est.fasta 118869964 118386847 99.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1799 1552
transcript 1440 1241
exon 247 152
intron 76 61
description:
protein length (aa) 419 345
exons per gene 5.83 5
# of gene models 14981


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.