Info • Haematococcus lacustris NIES-144

Status

The Haematococcus lacustris NIES-144 genome sequence and gene models have not been determined by the JGI, but were downloaded from GenBank on July 09, 2021. Please note that this copy of the genome is not maintained by GenBank and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Genome Assembly
Genome Assembly size (Mbp) 171.79
Sequencing read coverage depth
# of contigs 36608
# of scaffolds 9693
# of scaffolds >= 2Kbp 7180
Scaffold N50 1334
Scaffold L50 (Mbp) 0.04
# of gaps 26915
% of scaffold length in gaps 25.6%
Three largest Scaffolds (Mbp) 0.22, 0.21, 0.20


Gene Models KU_gene_models
length (bp) of: average median
gene 1873 1209
transcript 555 402
exon 128 105
intron 393 262
description:
protein length (aa) 185 134
exons per gene 4.33 3
# of gene models 28279


Genome Reference(s)

Links

Funding

This project was not sequenced at the JGI.