Info • Gracilaria gracilis GNS1m

Status

The Gracilaria gracilis GNS1m genome sequence and gene models were not determined by the Joint Genome Institute (JGI), but were downloaded from Rhodoexplorer on July 18, 2023. All published models are available as ExternalModels. In order to ensure this genome is comparable to those sequenced and annotated by the JGI, we applied standard filters to ExternalModels to produce the initial GeneCatalog. A total of 981 external models were excluded based on one of the following classifications: 1) association with repetitive elements, 2) pseudogenes with internal stop codons, 3) alternative isoforms or overlapping transcript models, 4) alleles on secondary scaffolds, and 5) short models lacking functional annotation. Please note that this copy of the genome is not maintained by its authors and is therefore not automatically updated. In order to allow comparative analyses with other genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to the genes.

Genome Assembly
Genome Assembly size (Mbp) 76.01
Sequencing read coverage depth 364.0x
# of contigs 279
# of scaffolds 279
# of scaffolds >= 2Kbp 279
Scaffold N50 38
Scaffold L50 (Mbp) 0.58
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.31, 1.75, 1.55


Gene Models FilteredModels1
length (bp) of: average median
gene 1643 1191
transcript 1371 1119
exon 895 690
intron 514 110
description:
protein length (aa) 457 373
exons per gene 1.53 1
# of gene models 8693


Genome Reference(s)

Links

Funding

This project was not sequenced at the JGI.