Status
This genome was sequenced by Jean-François Pombert, Mohammed Selmanb, Fabien Burki et al. in Department of Botany, Canadian Institute for Advanced Research, University of British Columbia, Vancouver, BC, V6T 1Z4 Canada (Gain and loss of multiple functionally related, horizontally transferred genes in the reduced genomes of two microsporidian parasites). Please check their data use policies.
Summary statistics for the Encephalitozoon romaleae
SJ-2008 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 2.19 |
| Sequencing read coverage depth | 300x |
| # of contigs | 13 |
| # of scaffolds | 13 |
| # of scaffolds >= 2Kbp | 13 |
| Scaffold N50 | 6 |
| Scaffold L50 (Mbp) | 0.19 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.23, 0.23, 0.21 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1065 | 843 |
| transcript | 1065 | 843 |
| exon | 1046 | 831 |
| intron | 31 | 28 |
| description: | ||
| protein length (aa) | 355 | 281 |
| exons per gene | 1.02 | 1 |
| # of gene models | 1831 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Pombert JF, Selman M, Burki F, Bardell FT, Farinelli L, Solter LF, Whitman DW, Weiss LM, Corradi N, Keeling PJ
Gain and loss of multiple functionally related, horizontally transferred genes in the reduced genomes of two microsporidian parasites.
Proc Natl Acad Sci U S A. 2012 Jul 31;109(31):12638-43. doi: 10.1073/pnas.1205020109
Pombert JF, Selman M, Burki F, Bardell FT, Farinelli L, Solter LF, Whitman DW, Weiss LM, Corradi N, Keeling PJ
Gain and loss of multiple functionally related, horizontally transferred genes in the reduced genomes of two microsporidian parasites.
Proc Natl Acad Sci U S A. 2012 Jul 31;109(31):12638-43. doi: 10.1073/pnas.1205020109
Funding
This project was not sequenced at the JGI.
