Info • Capronia semiimmersa CBS27337

Status

Capronia semiimmersa was sequenced by the Broad Institute as part of the black yeast comparative genomics project. The genome and gene models of Capronia semiimmersa were downloaded from NCBI on June 1, 2016. JGI tools were used to add functional annotations to the gene models. Please note that this copy of the genome is not maintained by NCBI or the Broad Institute and is therefore not automatically updated. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm.

 

Summary statistics for the C. semiimmersa release are below.
Genome Assembly
Genome Assembly size (Mbp) 31.62
Sequencing read coverage depth
# of contigs 73
# of scaffolds 13
# of scaffolds >= 2Kbp 9
Scaffold N50 3
Scaffold L50 (Mbp) 4.95
# of gaps 60
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 6.06, 5.16, 4.95


Gene Models ExternalModels
length (bp) of: average median
gene 2204 1991
transcript 2077 1854
exon 809 472
intron 79 59
description:
protein length (aa) 506 442
exons per gene 2.57 2
# of gene models 11909


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Teixeira MM, Moreno LF, Stielow BJ, Muszewska A, Hainaut M, Gonzaga L, Abouelleil A, Patané JS, Priest M, Souza R, Young S, Ferreira KS, Zeng Q, da Cunha MM, Gladki A, Barker B, Vicente VA, de Souza EM, Almeida S, Henrissat B, Vasconcelos AT, Deng S, Voglmayr H, Moussa TA, Gorbushina A, Felipe MS, Cuomo CA, de Hoog GS
Exploring the genomic diversity of black yeasts and relatives (Chaetothyriales, Ascomycota).
Stud Mycol. 2017 Mar;86():1-28. doi: 10.1016/j.simyco.2017.01.001

Funding

This project was not sequenced at the JGI.