Status
The genome sequence and gene prediction of Blumeria graminis f. sp. tritici 96224 have not been determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Sept 15, 2017. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.
Summary statistics for the Blumeria graminis f. sp.
tritici 96224 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 158.94 |
| Sequencing read coverage depth | 13.0x |
| # of contigs | 21712 |
| # of scaffolds | 1867 |
| # of scaffolds >= 2Kbp | 1867 |
| Scaffold N50 | 58 |
| Scaffold L50 (Mbp) | 0.76 |
| # of gaps | 19845 |
| % of scaffold length in gaps | 48.4% |
| Three largest Scaffolds (Mbp) | 5.20, 2.96, 2.57 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1443 | 1174 |
| transcript | 1333 | 1068 |
| exon | 536 | 298 |
| intron | 75 | 55 |
| description: | ||
| protein length (aa) | 444 | 356 |
| exons per gene | 2.49 | 2 |
| # of gene models | 6525 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Wicker T, Oberhaensli S, Parlange F, Buchmann JP, Shatalina M, Roffler S, Ben-David R, Doležel J, Šimková H, Schulze-Lefert P, Spanu PD, Bruggmann R, Amselem J, Quesneville H, Ver Loren van Themaat E, Paape T, Shimizu KK, Keller B
The wheat powdery mildew genome shows the unique evolution of an obligate biotroph.
Nat Genet. 2013 Sep;45(9):1092-6. doi: 10.1038/ng.2704
Wicker T, Oberhaensli S, Parlange F, Buchmann JP, Shatalina M, Roffler S, Ben-David R, Doležel J, Šimková H, Schulze-Lefert P, Spanu PD, Bruggmann R, Amselem J, Quesneville H, Ver Loren van Themaat E, Paape T, Shimizu KK, Keller B
The wheat powdery mildew genome shows the unique evolution of an obligate biotroph.
Nat Genet. 2013 Sep;45(9):1092-6. doi: 10.1038/ng.2704
Funding
This project was not sequenced at the JGI.
