Basidiobolus meristosporus CBS 931.73 v1.0
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Status

[Sept 2015] The Basidiobolus meristosporus CBS931.73 v1.0 genome was sequenced using the PacBio platform and assembled together with Falcon followed by finisherSC (Lam et al., 2015).

Summary statistics for the Basidiobolus meristosporus CBS 931.73 finSC v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 89.49
Sequencing read coverage depth
# of contigs 1366
# of scaffolds 1366
# of scaffolds >= 2Kbp 1366
Scaffold N50 272
Scaffold L50 (Mbp) 0.11
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.35, 0.31, 0.29


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator_assembled_Illumina_ESTs 21810 20143 92.4%


Gene Models GeneCatalog_2015_06_30_09_37
length (bp) of: average median
gene 1446 1180
transcript 1234 1005
exon 322 161
intron 77 63
description:
protein length (aa) 376 299
exons per gene 3.83 2
# of gene models 16111


Collaborators

Andrii Gryganskyi, Duke University, NC

Jason Stajich, UC Riverside, CA

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.