Asterochloris sp. Cgr/DA1pho v2.0

Status

Assembly v3 (07 December 2011) is a draft assembly of 454 gDNA reads. A total of 151 scaffolds and 55.8 Mbp were assembled using Newbler.

This genome sequence and gene prediction of the Cladonia grayi photobiont (Asterochloris sp.) were not determined by the JGI, but were acquired from Ty Wang and Olaf Mueller at Duke U. on December 07 2011. This copy of the genome does not include the mitochondrial or plastid chromosomes or genes. The JGI Annotation Pipeline was used to add additional functional annotation to Duke's scaffolds and gene models.
Summary statistics for the Asterochloris sp. Cgr/DA1pho v2.0 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 55.82
Sequencing read coverage depth 1
# of contigs 1723
# of scaffolds 151
# of scaffolds >= 2Kbp 151
Scaffold N50 25
Scaffold L50 (Mbp) 0.78
# of gaps 786
% of scaffold length in gaps 0.7%
Three largest Scaffolds (Mbp) 2.36, 1.54, 1.53


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests 454_ESTs 740680 89255 12.1%
Other Newbler_contigs 17471 3333 19.1%


Gene Models Maker
length (bp) of: average median
gene 4237 3055
transcript 1379 1032
exon 154 135
intron 361 295
description:
protein length (aa) 447 333
exons per gene 8.95 7
# of gene models 10025


Funding

This project was not sequenced at the JGI.