Phycocosm Portals

211	Name	Assembly Length	# of Genes	Publication
1	Entomoneis sp. UTEX 11IV18-2A FL v1.0	459,747,087	32,720
2	Scenedesmus obliquus SAG 2326 v1.0	104,249,355	17,007
3	Scenedesmus sp. WC-1 v1.0	102,320,957	17,012
4	Scenedesmus dimorphus UTEX 1237 v1.0	102,569,700	17,373
5	Haematococcus lacustris Liv1 v1.2	291,505,220	21,373
6	Haematococcus lacustris NIES-144	171,794,631	28,279	Morimoto D et al., 2020
7	Volvox reticuliferus NIES-3786	133,961,728	12,974	Yamamoto K et al., 2021
8	Volvox africanus NIES-3780	129,328,469	12,622	Yamamoto K et al., 2021
9	Volvox reticuliferus NIES-3785	133,065,142	13,178	Yamamoto K et al., 2021
10	Gracilaria gracilis GNS1m	76,009,156	8,693	Lipinska AP et al., 2023
11	Gracilaria vermiculophylla HapMaleFtJ-2017	45,957,138	6,327	Lipinska AP et al., 2023
12	Sargassum fusiforme	394,427,661	17,495	Wang S et al., 2020
13	Chlorella sorokiniana DOE1412	57,881,618	10,257	Hovde Blake T. et al., 2018
14	Chlorella sorokiniana UTEX 1602	59,371,605	9,245	Arriola MB et al., 2018
15	Chlorella sorokiniana UTEX 1230	58,534,920	12,209	Hovde Blake T. et al., 2018
16	Chlorella sorokiniana strain 1228	61,391,260	11,701	Hovde Blake T. et al., 2018
17	Micractinium conductrix SAG 241.80	60,773,875	8,739	Arriola MB et al., 2018
18	Auxenochlorella protothecoides UTEX 25	21,217,637	5,688	Vogler Brian W. et al., 2018
19	Nannochloropsis oceanica CCAP849/10	29,986,049	10,044
20	Seminavis robusta D6	125,572,603	33,143	Osuna-Cruz CM et al., 2020
21	Chlamydomonas eustigma NIES-2499	66,605,202	13,365	Hirooka S et al., 2017
22	Trebouxiophyceae sp. bin 3300059473_978 v1.0	16,200,188	7,783
23	Trebouxiophyceae sp. bin 3300059473_6682 v1.0	18,077,445	8,628
24	Chlorellaceae sp. bin 3300059473_4402 v1.0	14,333,578	8,227
25	Chlorellaceae sp. bin 3300059473_4966 v1.0	14,819,488	8,098
26	Amoebophrya ceratii AT5.2	87,690,817	18,158	John U et al., 2019
27	Undaria pinnatifida M23	511,280,173	12,499	Shan T et al., 2020
28	Neopyropia yezoensis U-51	43,483,963	8,598	Nakamura Y et al., 2013
29	Prasinoderma coloniale CCMP1413	25,323,194	6,927	Li L et al., 2020
30	Fistulifera solaris JPCC DA0580	49,736,633	14,395	Tanaka T et al., 2015
31	Proteomonas sulcata CCMP 1175 v1.1	270,343,095	34,130
32	Chloromonas remiasii CCCryo 005-99 v1.0	493,134,015	38,828
33	Polarella glacialis CCMP2088	2,147,483,647	34,066	Stephens TG et al., 2020
34	Polarella glacialis CCMP1383	2,147,483,647	37,736	Stephens TG et al., 2020
35	Paulinella micropora KR01	707,124,085	15,326	Lhee D et al., 2021
36	Cyclotella cryptica CCMP332 v2.0	171,139,483	14,429	Traller JC et al., 2016
37	Chlorokybus atmophyticus CCAC 0220	74,335,726	8,693	Wang S et al., 2020
38	Mesostigma viride NIES-296	441,698,809	16,232	Liang Z et al., 2020
39	Mesotaenium endlicherianum SAG12.97	173,768,482	10,300	Cheng S et al., 2019
40	Gracilaria domingensis SP 400837	77,739,776	9,746	Nakamura-Gouvea N et al., 2022
41	Raphidocelis subcapitata NIES-35	51,162,697	13,088	Suzuki S et al., 2018
42	Botryococcus braunii Showa	170,200,492	13,943	Browne DR et al., 2017
43	Mesostigma viride CCAC 1140	281,412,241	8,789	Wang S et al., 2020
44	Spirogloea muscicola CCAC 0214	171,136,975	24,093	Cheng S et al., 2019
45	Klebsormidium nitens NIES-2285 v1.1	103,921,766	15,568	Hori K et al., 2014
46	Astrephomene gubernaculifera NIES-4017	103,829,650	13,067	Yamashita S et al., 2021
47	Chlamydomonas reinhardtii CC-4532 v6.1	114,035,500	16,090	Craig RJ et al., 2023
48	Mayamaea pseudoterrestris NIES-4280	30,627,229	10,680	Suzuki S et al., 2022
49	Fragilaria crotonensis SAG 28.96	61,849,504	18,721	Zepernick BN et al., 2022
50	Chaetoceros tenuissimus NIES-3715	41,001,288	17,253	Hongo Y et al., 2021
51	Ostreobium quekettii SAG 6.99	151,902,089	9,649	Iha Cintia et al., 2021
52	Nitzschia putrida NIES-4239	34,998,307	13,794	Kamikawa R et al., 2022
53	Nannochloropsis gaditana CCMP1894	30,865,741	8,928	Schwartz AS et al., 2018
54	Alaria esculenta A1	487,803,962	18,078	Bringloe TT et al., 2022
55	Nannochloris desiccata UTEX 2526	21,550,525	8,818	Sanders CK et al., 2022
56	Helicosporidium sp. ATCC 50920	12,373,820	5,602	Pombert JF et al., 2014
57	Nannochloris desiccata UTEX 2437	20,738,005	7,973	Sanders CK et al., 2022
58	Monodopsis strain C73	59,696,957	12,958	Yang HP et al., 2021
59	Monodopsis strain C141	60,466,283	12,961	Yang HP et al., 2021
60	Vischeria strain C74	106,485,303	15,625	Yang HP et al., 2021
61	Macrocystis pyrifera CI_03 v1.0	537,452,659	25,919	Diesel J et al., 2023
62	Pedinomonas minor SAG 1965-3	54,966,539	10,504	Xu Y et al., 2022
63	Pedinophyceae sp. YPF-701	27,899,919	7,759	Repetti SI et al., 2022
64	Zygnema cf. cylindricum SAG 698-1a	359,785,760	14,200	Feng Xuehuan et al., 2023
65	Zygnema circumcarinatum UTEX 1559	71,310,527	12,038	Feng Xuehuan et al., 2023
66	Zygnema circumcarinatum UTEX 1560	67,280,745	12,436	Feng Xuehuan et al., 2023
67	Scenedesmus obliquus UTEX 3031	205,013,584	13,349	Biondi Thomas C. et al., 2024
68	Coccomyxa subellipsoidea C-169 v3.0	48,852,666	10,893	Blanc G et al., 2012
69	Porphyridium purpureum CCMP1328	22,192,338	8,278	Bhattacharya D et al., 2013
70	Microglena sp. YARC	572,689,865	19,590	Ye N et al., 2022
71	Micromonas sp. AD1 metagenome extracted assembly	21,112,593	11,269	Duncan A et al., 2022
72	Mesotaenium kramstae Lemmermann NIES-657 v3.0	331,691,281	15,982
73	Scenedesmus obliquus UTEX 393 v2.0	107,859,680	19,017
74	Cafeteria roenbergensis BVI	36,283,887	8,555	Hackl T et al., 2020
75	Chlamydomonas priscuii UWO241	211,641,456	14,754	Stahl-Rommel S et al., 2022
76	Monoraphidium minutum 26B-AM v1.0	68,170,630	15,337	Calhoun Sara et al., 2022
77	Tetradesmus deserticola SNI-2 v1.1	198,160,740	17,197
78	Flechtneria rotunda SEV3VF49 v1.1	76,784,650	16,599
79	Tetradesmus obliquus UTEX 72 v1.1	107,156,682	16,985
80	Enallax costatus CCAP 276/31 v1.1	127,564,975	19,308
81	Hyphochytrium catenoides ATCC 18719	68,540,538	18,481	Leonard G et al., 2018
82	Desmodesmus armatus UTEX B 2533 v2.0	122,633,162	15,634
83	Chromera velia CCMP2878	193,889,730	24,133	Woo YH et al., 2015
84	Labyrinthula sp. SR_Ha_C	50,948,119	8,488	Tan MH et al., 2021
85	Hondaea fermentalgiana CCAP_4062/3	38,943,350	11,853	Seddiki K et al., 2018
86	Nitzschia inconspicua GAI-293 v2.0	99,706,970	17,968	Oliver A et al., 2021
87	Tribonema minus UTEX B 3156 v1.0	158,345,074	18,290	Mahan KM et al., 2021
88	Hyaloperonospora arabidopsidis Emoy2 v2.0	78,897,814	9,138	Baxter L et al., 2010
89	Scenedesmus obliquus var. DOE0013 v1.0	102,771,905	15,938
90	Scenedesmus obliquus var. UTEX 1450 v1.0	104,043,312	16,565
91	Scenedesmus obliquus var. UTEX2630 v1.0	106,020,692	16,604
92	Fugacium kawagutii CCMP2468	1,048,482,934	26,609	Lin S et al., 2015
93	Cladocopium goreaui SCF055-01	1,027,792,016	35,913	Liu H et al., 2018
94	Breviolum minutum	609,476,485	47,014	Shoguchi E et al., 2013
95	Nannochloropsis salina CCMP1776	27,757,252	8,927	Ohan JA et al., 2019
96	Nemacystus decipiens Onna-1	153,973,811	17,099	Nishitsuji K et al., 2019
97	Chlamydomonas schloesseri CCAP 11/173	130,201,002	16,268	Craig RJ et al., 2021
98	Picocystis sp. ML	29,463,432	5,613	Junkins EN et al., 2019
99	Chlamydomonas incerta SAG 7.73	129,236,421	16,957	Craig RJ et al., 2021
100	Edaphochlamys debaryana CCAP 11/70	142,143,002	20,450	Craig RJ et al., 2021
101	Cladosiphon okamuranus S strain	169,730,755	14,750	Nishitsuji K et al., 2016
102	Galdieria sulphuraria Azora	14,055,766	6,305	Rossoni AW et al., 2019
103	Galdieria sulphuraria MtSh	14,998,623	6,160	Rossoni AW et al., 2019
104	Cyanidioschyzon merolae Soos	12,336,830	4,406	Rossoni AW et al., 2019
105	Galdieria phlegrea Soos	14,871,243	6,125	Rossoni AW et al., 2019
106	Galdieria sulphuraria SAG 21.92	14,317,600	5,956	Rossoni AW et al., 2019
107	Galdieria sulphuraria MS1	14,906,717	7,441	Rossoni AW et al., 2019
108	Galdieria sulphuraria YNP5578.1	14,439,647	6,118	Rossoni AW et al., 2019
109	Galdieria sulphuraria 5572	14,288,869	6,472	Rossoni AW et al., 2019
110	Galdieria sulphuraria 002	14,106,382	5,912	Rossoni AW et al., 2019
111	Galdieria sulphuraria RT22	15,626,563	6,982	Rossoni AW et al., 2019
112	Chlorella sorokiniana str. 1228	61,391,260	12,169	Hovde Blake T. et al., 2018
113	Chlorella sorokiniana UTEX 1602	59,371,605	10,384	Arriola MB et al., 2018
114	Trebouxia sp. A1-2	52,896,788	13,918	Greshake Tzovaras B et al., 2020
115	Picochlorum renovo	14,391,424	9,010	Dahlin LR et al., 2019
116	Auxenochlorella protothecoides UTEX 25	21,217,637	6,041	Vogler Brian W. et al., 2018
117	Chlorella sorokiniana DOE1412	57,881,618	12,611	Hovde Blake T. et al., 2018
118	Picochlorum soloecismus DOE101	15,252,578	6,861	Gonzalez-Esquer CR et al., 2018
119	Chlorella sp. A99	40,934,037	8,298	Hamada M et al., 2018
120	Tetrabaena socialis NIES-571	135,779,852	14,296	Featherston J et al., 2018
121	Chlorella sorokiniana UTEX 1230	58,534,920	12,871	Hovde Blake T. et al., 2018
122	Cyanophora paradoxa CCMP329	98,351,904	25,518	Price DC et al., 2019
123	Tetraselmis striata	232,085,675	46,696	Steadman Tyler CR et al., 2019
124	Chara braunii S276	1,750,992,823	35,672	Nishiyama T et al., 2018
125	Micractinium conductrix SAG 241.80	60,773,875	10,070	Arriola MB et al., 2018
126	Vitrella brassicaformis CCMP3155	72,700,666	21,239	Woo YH et al., 2015
127	Ochromonas sp. CCMP1393 v1.4	56,491,843	19,714
128	Paraphysomonas imperforata CCMP1604 v1.4	67,191,102	17,134
129	Minidiscus variabilis CCMP495 v1.0	76,188,022	25,179
130	Scenedesmus sp. NREL 46B-D3 v1.0	151,896,789	17,399	Calhoun S et al., 2021
131	Chloropicon primus CCMP1205	17,400,691	8,327	Lemieux C et al., 2019
132	Caulerpa lentillifera	28,654,260	8,818	Arimoto A et al., 2019
133	Chlamydomonas reinhardtii CC-503 v5.6	111,100,715	16,403	Merchant SS et al., 2007
134	Volvox carteri v2.1	131,163,211	13,076	Prochnik SE et al., 2010
135	Scenedesmus obliquus EN0004 v1.0	100,077,845	15,053
136	Reticulomyxa filosa	101,867,045	39,963	Glöckner G et al., 2014
137	Tetrahymena thermophila SB210	103,014,375	26,994	Eisen JA et al., 2006
138	Plasmodium falciparum 3D7	23,326,872	5,392	Gardner MJ et al., 2002
139	Toxoplasma gondii ME49	65,668,120	8,318	Kissinger JC et al., 2003
140	Oxytricha trifallax JRB310	67,158,112	24,578	Swart EC et al., 2013
141	Paramecium tetraurelia d4_2	72,094,543	39,580	Aury JM et al., 2006
142	Trichomonas vaginalis G3	176,420,065	59,679	Carlton JM et al., 2007
143	Trypanosoma brucei brucei TREU927	26,075,494	8,787	Berriman M et al., 2005
144	Giardia intestinalis ATCC 50803	11,213,615	6,502	Morrison HG et al., 2007
145	Phaeocystis antarctica CCMP1374 v2.2	198,936,094	37,754
146	Phaeocystis globosa Pg-G v2.3	155,849,266	30,220
147	Chromochloris zofingiensis SAG 211-14 v5.0	60,130,699	15,274	Roth MS et al., 2017
148	Chondrus crispus Stackhouse	104,980,420	9,808	Collén J et al., 2013
149	Cyanidioschyzon merolae strain 10D	16,546,747	4,803	Nozaki H et al., 2007
150	Galdieria sulphuraria 074W	13,712,004	7,174	Schönknecht G et al., 2013
151	Symbiodinium microadriaticum CCMP2467	808,226,712	43,403	Aranda M et al., 2016
152	Chrysochromulina tobin CCMP291	59,073,094	16,770	Hovde BT et al., 2015
153	Nannochloropsis oceanica CCMP1779 v2.0	36,454,932	10,641
154	Symbiochloris reticulata Scotland extracted metagenome v1.0	59,360,525	12,315
155	Symbiochloris reticulata Switzerland extracted metagenome v1.0	59,348,134	12,701
156	Symbiochloris reticulata Spain extracted metagenome v1.0	56,841,181	12,144
157	Symbiochloris reticulata Africa extracted metagenome v1.0	58,569,719	12,720
158	Porphyra umbilicalis isolate 4086291	87,888,981	13,567	Brawley SH et al., 2017
159	Nannochloropsis gaditana B-31	27,589,342	10,929	Corteggiani Carpinelli E et al., 2014
160	Blastocystis hominis Singapore isolate B (sub-type 7)	18,817,245	6,020	Denoeud F et al., 2011
161	Saprolegnia parasitica CBS 223.65	53,093,248	20,113	Jiang RH et al., 2013
162	Ectocarpus siliculosus Ec 32	195,810,619	16,271	Cock JM et al., 2010
163	Phytophthora infestans T30-4	228,543,505	17,797	Haas BJ et al., 2009
164	Thalassiosira oceanica CCMP1005	92,185,637	34,642	Lommer M et al., 2012
165	Auxenochlorella protothecoides 0710	22,924,637	7,013	Gao C et al., 2014
166	Sorghum bicolor	738,540,932	35,899	Paterson AH et al., 2009
167	Ostreococcus tauri RCC4221 v3.0	12,916,858	7,669	Blanc-Mathieu R et al., 2014
168	Ostreococcus tauri RCC1115 v1.0	14,904,543	8,218	Blanc-Mathieu R et al., 2017
169	Cryptophyceae sp. CCMP2293 v1.0	534,466,773	33,051	Dorrell RG et al., 2023
170	Pavlovales sp. CCMP2436 v1.0	165,407,586	26,034	Dorrell RG et al., 2023
171	Pelagophyceae sp. CCMP2097 v1.0	85,824,453	19,402	Dorrell RG et al., 2023
172	Ochromonadaceae sp. CCMP2298 v1.0	61,140,752	20,195	Dorrell RG et al., 2023
173	Symbiochloris reticulata Spain reference genome v1.0	58,316,282	12,582
174	Micromonas commoda NOUM17 (RCC 299)	20,989,326	10,262	Worden AZ et al., 2009
175	Micromonas pusilla CCMP1545	21,945,545	9,829	Worden AZ et al., 2009
176	Asterochloris glomerata Cgr/DA1pho v2.0	55,816,160	10,025	Armaleo D et al., 2019
177	Emiliania huxleyi CCMP1516 v1.0	167,727,055	33,341	Read BA et al., 2013
178	Naegleria gruberi v1.0	40,964,085	15,763	Fritz-Laylin LK et al., 2010
179	Phytophthora sojae v3.0	82,601,618	26,584	Tyler BM et al., 2006
180	Phytophthora ramorum v1.1	66,652,401	15,743	Tyler BM et al., 2006
181	Aureococcus anophagefferens clone 1984 v1.0	56,660,578	11,501	Gobler CJ et al., 2011
182	Phaeodactylum tricornutum	1,311,968	377	Bowler C et al., 2008
183	Chlorella variabilis NC64A v1.0	46,159,515	9,791	Blanc G et al., 2010
184	Selaginella moellendorffii v1.0		22,285	Banks JA et al., 2011
185	Ostreococcus sp. RCC809	13,296,292	3,174
186	Ostreococcus lucimarinus	13,204,888		Palenik B et al., 2007
187	Physcomitrium patens v1.1	479,985,347	35,938	Rensing SA et al., 2008
188	Arabidopsis lyrata	206,667,935		Hu TT et al., 2011
189	Schizochytrium aggregatum ATCC 28209 v1.0	40,854,260	10,612
190	Aplanochytrium kerguelense PBS07 v1.0	35,774,161	11,892
191	Aurantiochytrium limacinum ATCC MYA-1381 v1.0	60,926,267	14,859
192	Phytophthora cinnamomi var cinnamomi v1.0	77,967,402	26,131
193	Pseudo-nitzschia multiseries CLN-47	218,730,801	19,703
194	Bigelowiella natans CCMP2755 v1.0	94,701,163	21,708	Curtis BA et al., 2012
195	Guillardia theta CCMP2712 v1.0	87,159,915	24,840	Curtis BA et al., 2012
196	Phytophthora capsici LT1534 v11.0	64,023,748	19,805	Lamour KH et al., 2012
197	Fragilariopsis cylindrus CCMP 1102	80,540,407	21,066	Mock T et al., 2017
198	Thalassiosira pseudonana CCMP 1335	1,135,583	386	Bowler C et al., 2008
199	Phaeodactylum tricornutum CCAP 1055/1 v2.0	26,138,756	10,025	Bowler C et al., 2008
200	Thalassiosira pseudonana CCMP 1335 v3.0	31,301,782	11,390	Armbrust EV et al., 2004
201	Chrysochromulina parva Lackey	65,764,750	24,838	Hovde Blake T. et al., 2019
202	Diacronema lutheri NIVA-4/92	43,502,671	13,777	Hulatt CJ et al., 2021
203	Saccharina japonica str. Ja	548,536,073	18,732	Ye N et al., 2015
204	Gracilariopsis chorda SKKU-2015	92,180,038	8,855	Lee J et al., 2018
205	Gonium pectorale NIES-2863	148,806,073	16,290	Hanschen ER et al., 2016
206	Monoraphidium neglectum SAG 48.87	69,711,829	16,755	Bogen C et al., 2013
207	Zygnema circumcarinatum SAG 698-1b	70,999,792	10,678	Feng Xuehuan et al., 2023
208	Bathycoccus prasinos RCC1105	15,074,320	7,900	Moreau H et al., 2012
209	Ulva mutabilis Foyn	98,484,689	11,066	De Clerck O et al., 2018
210	Dunaliella salina CCAP19/18	343,704,392	18,801	Polle Juergen E. W. et al., 2017
211	Populus trichocarpa v1.1	485,510,911	45,555	Tuskan GA et al., 2006