Nematostella vectensis v1.0
Status
Nematostella vectensis genome assembly 1.0 constructed with the JGI assembler, Jazz, includes approximately 7.8X WGS in small insert end-sequence coverage. After trimming for vector and quality, and excluding short/redundant scaffolds, there were 10,942 assembled scaffolds, containing 2,817,779 reads, and 357 Mbp of sequence. Further exclusion of contaminant and mis-assembled scaffolds reduced this to 10,804 scaffolds, with a total length of 356 Mbp Roughly half of the genome is contained in 181 scaffolds all at least 473 Kb in length.
 
Collaborators
 
References
Putnam NH, Srivastava M, Hellsten U, Dirks B, Chapman J, Salamov A, Terry A, Shapiro H, Lindquist E, Kapitonov VV, Jurka J, Genikhovich G, Grigoriev IV, Lucas SM, Steele RE, Finnerty JR, Technau U, Martindale MQ, Rokhsar DS. (2007) Sea anemone genome reveals ancestral eumetazoan gener epertoire and genomic organization. Science. 317, 86-94.
 
Funding

This work was performed under the auspices of the US Department of Energy's Office of Science, Biological and Environmental Research Program and the by the University of California, Lawrence Livermore National Laboratory under Contract No. W-7405-Eng-48, Lawrence Berkeley National Laboratory under contract No. DE-AC03-76SF00098 and Los Alamos National Laboratory under contract No. W-7405-ENG-36.