Status
This draft release was produced using Illumina data (2x76 300bp, 2x150 270bp, 2x100 4kb CLIP) and 15kb shredded data from a Newbler assembly and was assembled using the AllPathsLG assembler.
Summary statistics for the Dekkera bruxellensis CBS 2499
v1.0 release are below.
Genome Assembly | |
Genome Assembly size (Mbp} | 13.37 |
Sequencing read coverage depth | 127.5 |
# of contigs | 1374 |
# of scaffolds | 84 |
# of scaffolds >= 2Kbp | 45 |
Scaffold N50 | 3 |
Scaffold L50 (Mbp) | 1.79 |
# of gaps | 645 |
% of scaffold length in gaps | 4.2% |
Three largest Scaffolds (Mbp) | 2.87, 2.05, 1.79 |
ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
Other | Illumina RNAseq assemblies | 9759 | 8359 | 85.7% |
Gene Models | FilteredModels1 | |
length (bp) of: | average | median |
gene | 1631 | 1384 |
transcript | 1537 | 1323 |
exon | 1067 | 848 |
intron | 216 | 86 |
description: | ||
protein length (aa) | 457 | 382 |
exons per gene | 1.44 | 1 |
# of gene models | 5600 |
Collaborators
Trevor Phister, Ph.D., North Carolina State University
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Piškur J, Ling Z, Marcet-Houben M, Ishchuk OP, Aerts A, LaButti K, Copeland A, Lindquist E, Barry K, Compagno C, Bisson L, Grigoriev IV, Gabaldón T, Phister T
The genome of wine yeast Dekkera bruxellensis provides a tool to explore its food-related properties.
Int J Food Microbiol. 2012 Jul 2;157(2):202-9. doi: 10.1016/j.ijfoodmicro.2012.05.008
Piškur J, Ling Z, Marcet-Houben M, Ishchuk OP, Aerts A, LaButti K, Copeland A, Lindquist E, Barry K, Compagno C, Bisson L, Grigoriev IV, Gabaldón T, Phister T
The genome of wine yeast Dekkera bruxellensis provides a tool to explore its food-related properties.
Int J Food Microbiol. 2012 Jul 2;157(2):202-9. doi: 10.1016/j.ijfoodmicro.2012.05.008
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.