Status
Assembly v1 (November 2012) is a draft assembly of Solexa gDNA reads. A total of 268 scaffolds and 177.6 Mbp were assembled using AllPathsLG.
Summary statistics for the Cenococcum geophilum 1.58 v1.0
release are below.
Genome Assembly | |
Genome Assembly size (Mbp} | 177.57 |
Sequencing read coverage depth | 75.0x |
# of contigs | 2893 |
# of scaffolds | 268 |
# of scaffolds >= 2Kbp | 207 |
Scaffold N50 | 26 |
Scaffold L50 (Mbp) | 2.24 |
# of gaps | 2625 |
% of scaffold length in gaps | 1.3% |
Three largest Scaffolds (Mbp) | 6.42, 6.11, 6.04 |
ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
Other | JGI_Rnnotator_RNA_contigs | 49620 | 42010 | 84.7% |
Gene Models | FilteredModels1 | |
length (bp) of: | average | median |
gene | 2083 | 1114 |
transcript | 994 | 642 |
exon | 244 | 96 |
intron | 356 | 55 |
description: | ||
protein length (aa) | 283 | 163 |
exons per gene | 4.08 | 3 |
# of gene models | 27529 |
Collaborators
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.