Status
[September 2023] The Diaporthe cf. heveae 1 LGMF1633 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 52.45 |
| Sequencing read coverage depth | 347.51x |
| # of contigs | 12 |
| # of scaffolds | 12 |
| # of scaffolds >= 2Kbp | 12 |
| Scaffold N50 | 4 |
| Scaffold L50 (Mbp) | 5.01 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 8.72, 6.64, 6.20 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 48093 | 47457 | 98.7% |
| Ests | est.fasta | 75104484 | 74694310 | 99.5% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1906 | 1673 |
| transcript | 1718 | 1509 |
| exon | 602 | 382 |
| intron | 103 | 71 |
| description: | ||
| protein length (aa) | 489 | 415 |
| exons per gene | 2.85 | 2 |
| # of gene models | 16378 |
Collaborators
Links
- 1000 Fungal Genomes Project
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Sordariomycetidae Diaporthales
- JGI EcoGroup Portal: Endophytic fungi
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
