Daphnia pulex

Download Data

Unless otherwise noted, all files are in FASTA format and compressed with Gnu Zip (gzip).To uncompress files: on Mac use StuffIt, on PC use WinZip or WinRAR.

NOTE: Masked regions are represented with lowercase characters; gaps in the assembly are represented with Ns.


Assembled scaffolds:

Daphnia_pulex.fasta.gz (unmasked)

Daphnia_pulex.allmasked.gz (masked)


"Filtered Models" is the filtered set of models representing the best gene model for each locus. "All Models" represents all models generated for this genome which may include redundant model sets for each locus. "Frozen Gene Catalog" contains all manual curations as of July 3, 2007 as well as automatically annotated models chosen from the FilteredModels v1.1 set.

Frozen Gene Catalog

FrozenGeneCatalog20110204.proteins.fasta.gz (proteins)

FrozenGeneCatalog20110204.transcripts.fasta.gz (transcripts)

FrozenGeneCatalog20110204.gff.gz (gff)

FrozenGeneCatalog20110204.gff3.gz (gff3)


Filtered Models v1.1

FilteredModelsv1.1.aa.fasta.gz (proteins)

FilteredModelsv1.1.na.fasta.gz (transcripts)

FilteredModelsv1.1.gff.gz (gff)

FilteredModels1.1.gff3.gz (gff3)

FilteredModels1.1.CDS.fasta.gz (CDS)

Filtered Models v1.0

FilteredModelsv1.0.aa.fasta.gz (proteins)

FilteredModelsv1.0.na.fasta.gz (transcripts)

FilteredModelsv1.0.gff.gz (gff)

FilteredModels1.0.gff3.gz (gff3)

FilteredModels1.0.CDS.fasta.gz (CDS)

All Models

allModels.aa.fasta.gz (proteins)

allModels.na.fasta.gz (transcripts)

allModels.gff.gz (genes)

allModels.gff3.gz (gff3)

allModels.CDS.fasta.gz (CDS)