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BLAST • Terfezia boudieri S1 v1.0
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Please note that this organism is for archival use only. Please see the current
Terfezia boudieri ATCC MYA-4762 v1.1
site for the latest data and information.
Query Sequences
Query Sequences
FASTA format
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Search Criteria
Alignment program
tblastx: blast nucleotide vs. translated nucleotide
tblastn: blast protein vs. translated nucleotide
blastn: blast nucleotide vs. nucleotide
blastx: blast translated nucleotide vs. protein
blastp: blast protein vs. protein
tblatn: blat protein vs. translated nucleotide
tblatx: blat nucleotide vs. translated nucleotide
blatn: blat nucleotide vs. nucleotide
blatp: blat protein vs. protein
blatx: blat translated nucleotide vs. protein
Databases
Program Settings
BLAST
BLAT
Expect
Word size
Filter low complexity regions
Perform gapped alignment
Scoring matrix
BLOSUM62
PAM30
PAM70
BLOSUM45
BLOSUM80
Min %-Identitity
Tile Size
Options
Enable fine-grain search which allows for smaller initial and terminal exons
Trim leading poly-T
Don't trim trailing poly-A
Remove poly-A tails from alignments
Fast DNA/DNA remapping (no introns, high %-id required)
Allow extension of alignment through large block of N's
