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BLAST • Aspergillus amylovorus CBS 600.67 v1.0
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Query Sequences
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Alignment program
tblastx: blast nucleotide vs. translated nucleotide
tblastn: blast protein vs. translated nucleotide
blastn: blast nucleotide vs. nucleotide
blastx: blast translated nucleotide vs. protein
blastp: blast protein vs. protein
tblatn: blat protein vs. translated nucleotide
tblatx: blat nucleotide vs. translated nucleotide
blatn: blat nucleotide vs. nucleotide
blatp: blat protein vs. protein
blatx: blat translated nucleotide vs. protein
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BLAST
BLAT
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Scoring matrix
BLOSUM62
PAM30
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Options
Enable fine-grain search which allows for smaller initial and terminal exons
Trim leading poly-T
Don't trim trailing poly-A
Remove poly-A tails from alignments
Fast DNA/DNA remapping (no introns, high %-id required)
Allow extension of alignment through large block of N's
