Arabidopsis lyrata
Please note that the latest data is available at Phytozome.
To view archival data, please see Arabidopsis lyrata v1.0.
Annotations/GenomesAraly1TotalAnnotation Description
Merops
653653
5555Water nucleophile; water bound by two Asp from monomer or dimer; all endopeptidases, from eukaryote organisms, viruses or virus-like organisms
77Water nucleophile; water bound by two Asp; all membrane-bound endopeptidases known only from eubacteria with active site on cytoplasmic side of cell membrane.
11Water nucleophile; water bound by two Asp
6666Cysteine nucleophile; catalytic residues in the order Cys, His, Asn (or Asp) in sequence
1515Cysteine nucleophile; catalytic residues in the order His, Cys in sequence
22Cysteine nucleophile; catalytic residues in the order His, Glu (or Asp), Cys in sequence
44Cysteine nucleophile; catalytic residues in the order Glu, Cys, His in sequence
55Cysteine nucleophile; catalytic residues in the order His, Cys in sequence
2020Families of peptidase inhibitors not assigned to clans
55
55
22
66
44
44
33Families of metallopeptidases not assigned to clans
1212Water nucleophile; water bound by single zinc ion ligated to two His (within the motif HEXXH) and Glu, His or Asp
33Water nucleophile; water bound by single zinc ion ligated to His, Glu (within the motif HXXE) and His
22Water nucleophile; water bound by single zinc ion ligated to two His (within the motif HXXEH) and Glu
33Water nucleophile; water bound by two zinc ions ligated by Lys, Asp, Asp, Asp, Glu
1616Water nucleophile; water bound by two cobalt or manganese ions ligated by Asp, Asp, His, Glu, Glu
2121Water nucleophile; water bound by two zinc ions ligated by His (or Asp), Asp, Glu, Asp (or Glu), His
44Water nucleophile; water bound by two zinc ions ligated by His, His or Asp, Lys or Glu, His, His.
66Water nucleophile; water bound by single zinc ion ligated to two His (within the motif HEXXH) and Asp; membrane proteins with intramembrane active site.
88Water nucleophile; water bound by single zinc ion ligated to two His and Asp (within the motif HSHP(X)9D)
22Asparagine nucleophile; catalytic residues in the order Asp, Asn in sequence; all self-processing endopeptidases
66Serine or cysteine nucleophile; catalytic residues in the order His, Asp, Ser (or Cys) in sequence; all endopeptidases
3434Threonine, serine or cysteine nucleophile at the N-terminus of mature enzyme
1313Serine or cysteine nucleophile; catalytic residues in the order Cys (or Ser), His, Glu in sequence.
11Families of serine peptidases not assigned to clans
5353Serine nucleophile; catalytic residues in the order Asp, His, Ser in sequence in family S8, but family S53 differs
218218Serine nucleophile; catalytic residues in the order Ser, Asp, His in sequence
11Serine nucleophile; catalytic residues in the order Ser, Lys (within the motif SXXK) in sequence
99Serine nucleophile; catalytic residues in the order Ser, Lys (or His) in sequence
1717Serine nucleophile; catalytic residues in the order Ser, His, Asp in sequence
2020Serine nucleophile; transmembrane protein with catalytic residues in the order Ser, His embedded in the membrane