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In general, searching without specifying fields will work fine (your
search will run against all fields by default). However, it is possible
to restrict searches to look at only a certain field, or combination of
fields. You can do this by specifying search terms in the form field:value.
For example, go_id:213 returns information about transcripts
annotated to GO ID 0000213.
- name The user-assigned name for the gene or
transcript.
- autoname The automatically-assigned gene name.
- defline The definition line.
- transcript_id Numeric ID for this transcript
(assigned automatically).
- go_id, go_desc, ec_id, ec_desc Gene
Ontology (GO) or Enzyme Commission (EC) codes or descriptions assigned
to this gene (leave off the "GO000" and "EC:" prefixes)
- ipr_id, ipr_desc InterPro codes
and descriptions (e.g.,
IPR000146).
- kog_id, kog_desc KOG ids and descriptions (e.g.,
KOG1417).
The allowed fields for homologous hit searches are:
- deflineThe definition line of the hit
sequence(if no field is specified, this is the default search field.
- taxnameThe organism the hit sequence is
derived from (e.g.,
Xenopus laevis, Bacillus halodurans).
- transcript_idNumeric id for this gene
(assigned automatically).
- go_id, ec_id, ipr_desc, etc.The ontology fields discussed above.
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