Browse • Phycomyces blakesleeanus v1.1
Please note that this organism is for archival use only. Please see the current Phycomyces blakesleeanus NRRL1555 v2.0 site for the latest data and information.
Gene Sequence

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Display Width: (bp)
Upstream/downstream Padding: (bp)

        TGGCCCTTTTTAAAAAATACTAAATGATACAAGGTTGTGAACACCGAGTATTGGATTTGCTGACGTGATA
        TGAAATGTCTGAAAATGGGTTTTTTTTTTTTTTTTAATAATTCTGTGAGAATACTTTTGATTTCTTCTTC
        TTCTTTTTCTTCTTCTTCTTTCTTGCCTGTATATTAATTACATATACGTGTGTACATAATATGGTAACGT
        TATTTTCTTAAAATTGTTTCAATGCAAATAATGGACAGGATACTAATTTCAGTATTGATATTATTATTGG
        TCAAAGATCAAAGTTGGAGATACTGTAAGAAATAGATATATGGCAGATATTTCTTTTATATATGTATAAA
        GACGGCAGAGAAATCTCTTCTCTCTCTTGAATAGTATCCGTTTTAACTAAATTTCTAATAATTTAATACT
        TTTCTTTTGGTTGGCTGTAAATAAATGCAATAATAGATTCCCGATGGAGTCCTTCAGTATGTTCCTTTTG
        ACCCAAAGGAAGAACTGGCAGCCTGTCCTCGGTAATCTCAATATAAATATAATTAAACATACACATACAC
        ATGTACAATATATGTATATATTGAAGCTAAACAATATATGTATATATATATATATATCTATGTATATAAC
        AGACCTCTCGCTTTCAAGGTCCATGAAAAACTCAAGGGTAAAAAGGTTGTTCTGTTTGCCATCCCAGGTA
        ACTAATAAAATTGACCCATCTCTTTTTTTTTCTTAATATATATAATATAATATAATGTAATGTAAAGCAA
        TGTAAACAAAATCATAATAACGATTATCTATAAAGGTCCATTTACGCCTGCTTGTTCAGAAGAGCATGTG
        CCTGGATTTCTGAATGCACACGATGCTCTAAAGTCAAAGGGTGTTAGTGAAATTGTATGCCTTTCGGTAG
        CAGATGGGTTTGTCATGAATGCGTTTGGAAAGGTCAGTCAGACAAAGGACAAGATTATTATGGCAGGAGA
        TGGCAGTGCTGTATTCAGTCAAGCTCTTGGCTTAACTCAGGATCTGTCCAAGAACGGAATGGGTACTCGA
        TCAAAGAGGTTTGCTATCGTTGTAGACGACCTGGTGGTCAAGTACATCGGGGTTGAGACCAAGCCTGGCG
        TTACCTCTTCTGGTGCAGAAGCAGTGCTAGCAAAGCTGTAATAGTCACAACAATAAAAACAATGAGTGTA
        AAAGAAAATAGAAGGAAAGATAGAGATAGAGATAAATATATATCAAAATATACAAAATATATTCGATGGG
        CGATATATATATATATATATCAAGAGAAATATCTTCGCCGTTCAAAACTATTTGGGTGTTTTGGTATATT
        TATGGTTTATAGACCCATGCTGTTCTTTAGA
  • picture of padding- upstream or downstream padding
  • picture of coding region- coding regions
  • picture of UTR- untranslated regions, or UTRs (noncoding exon sequences)
  • picture of intron- introns
  • picture of a translated frame- The translated frame of a coding sequence is highlighted with alternating colors (green or purple) to visualize the alignment.
  • picture of not correct amino acid- In cases where no frame shows the correct amino acid (i.e. at splice junctions where a codon spans the intron) the 2 amino acids in the frame of the exon are shown in bold rose, suggesting that the translation frame does not give the correct amino acid.
Transcript(507 bp)/CDS Sequence(507 bp)

        ATGATCAAAGTTGGAGATACTATTCCCGATGGAGTCCTTCAGTATGTTCCTTTTGACCCAAAGGAAGAAC
        TGGCAGCCTGTCCTCGACCTCTCGCTTTCAAGGTCCATGAAAAACTCAAGGGTAAAAAGGTTGTTCTGTT
        TGCCATCCCAGGTCCATTTACGCCTGCTTGTTCAGAAGAGCATGTGCCTGGATTTCTGAATGCACACGAT
        GCTCTAAAGTCAAAGGGTGTTAGTGAAATTGTATGCCTTTCGGTAGCAGATGGGTTTGTCATGAATGCGT
        TTGGAAAGGTCAGTCAGACAAAGGACAAGATTATTATGGCAGGAGATGGCAGTGCTGTATTCAGTCAAGC
        TCTTGGCTTAACTCAGGATCTGTCCAAGAACGGAATGGGTACTCGATCAAAGAGGTTTGCTATCGTTGTA
        GACGACCTGGTGGTCAAGTACATCGGGGTTGAGACCAAGCCTGGCGTTACCTCTTCTGGTGCAGAAGCAG
        TGCTAGCAAAGCTGTAA