Browse • Cochliobolus heterostrophus C5
Please note that this organism is for archival use only. Please see the current Cochliobolus heterostrophus C5 v3.0 site for the latest data and information.
Gene Sequence

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Upstream/downstream Padding: (bp)

        TACAAGTATCGAGCTTCAACCTCGAAAAAAATAAAGAAGAACCACAGCAGTTCGCAACATCTTTTTGTAA
        ATATACATTCTCTTCAGACTCTCTCTCTCTCTCTCGTTCACTCTGCTTTGCACTCCTTTCCTCCTACAAA
        TCAGTCCAAACGGCACAACATTTCTTCATACATTATTCAACAAATTCTGACTTTTAGCCACAATGCGTCC
        TTCAGCCATCACCCTCTTTGCCCTTGCGGTGACGCCCATCTCCGCCGTGGACCTCTCGCCTCGCGCGGGC
        GCCTGCCCTGCTGTTTGGCAAAGCGTAGCTAAAGACCTCGAGAATCTCTTCCAGGGTTGCAATAAAGCAG
        CTCGCTCAGCCGTTCGCGCTGTGCTCCACGACTGTTTGCCTGACGGCTGCAACGGCAGCTTGATCCTTTC
        CCAGCAAGAATGCTCACGGATCGAGAACCAAGGACTGAAAGACTACTGCCATACAATCAACCAGAAGCGC
        CTTCAGTACCGTGTTGGTGCTGCTGACATAGTCCAATTTGCCGGTGCAATGGCACTCTCAGCATGCCCGC
        TCGGCCCCCAGGTTACGGCGCTTGTGGGCAGAAAGGACAGCGCGGCAGCTGCACCACCAAATGGCCTACC
        GAGGAGCTCTGATTCTGTCCAAAGCATCTTGGCAAGGTTCGCAGCTAAGGGCTTCAGCCCTCAAGACGTG
        GTTGCGCTACTTGGAACCCACAGCATTGCGATCCAGTTCCAAGATGATCCCGCGAGAGCTGGCACACCAC
        TCGACTCGACGCCAGCTATATGTGACATTAGGTATTTCGCAGAGACGAAGGCCGGTACTGCGCCTTATAG
        TCTTAGGAGTGACCGTCTCATGTCCAGCGCACCCGAGGTAAGTATTCTGCATGTGATCAATACGTTTGAA
        AAATGACAAGCAGCTAACCGGTATTAAATCATAGACTTATAGACCATGGGCCGTCTACGCAAAGTCGACA
        GCGATGTGGGCCGATGCTTTTATAAGTGCATGGAGCCGGTTCGCGGTCATTGGCAACGACCCACAGAGTC
        TCCAGGACTGCTCTCATCTTATCCCCAAGTCCACGGTTCCCCGTGCCAGACAGGTGGCTCACGCACAAAT
        GATGGAAAAGTTGACCAAGAAGTTCATAGCATAGGAGCACTAAGCCAGAAGGTGGGGAAAGCTGAGTTTG
        GCTTGATGTGATTACTCTGAATTCTCTTTGGGATAGACAAGCGGATACAAGGCTTCATCAATCATATCTA
        TAGTAATTACTTCTTTAGACGCTATCTCCACTTGTCTTATCGAGGTTCAATGATTAGTGGTAGAAATCCA
        TGCTCAGCTTATACACATTTGTTG
  • picture of padding- upstream or downstream padding
  • picture of coding region- coding regions
  • picture of UTR- untranslated regions, or UTRs (noncoding exon sequences)
  • picture of intron- introns
  • picture of a translated frame- The translated frame of a coding sequence is highlighted with alternating colors (green or purple) to visualize the alignment.
  • picture of not correct amino acid- In cases where no frame shows the correct amino acid (i.e. at splice junctions where a codon spans the intron) the 2 amino acids in the frame of the exon are shown in bold rose, suggesting that the translation frame does not give the correct amino acid.
Transcript(887 bp)/CDS Sequence(885 bp)

        CAATGCGTCCTTCAGCCATCACCCTCTTTGCCCTTGCGGTGACGCCCATCTCCGCCGTGGACCTCTCGCC
        TCGCGCGGGCGCCTGCCCTGCTGTTTGGCAAAGCGTAGCTAAAGACCTCGAGAATCTCTTCCAGGGTTGC
        AATAAAGCAGCTCGCTCAGCCGTTCGCGCTGTGCTCCACGACTGTTTGCCTGACGGCTGCAACGGCAGCT
        TGATCCTTTCCCAGCAAGAATGCTCACGGATCGAGAACCAAGGACTGAAAGACTACTGCCATACAATCAA
        CCAGAAGCGCCTTCAGTACCGTGTTGGTGCTGCTGACATAGTCCAATTTGCCGGTGCAATGGCACTCTCA
        GCATGCCCGCTCGGCCCCCAGGTTACGGCGCTTGTGGGCAGAAAGGACAGCGCGGCAGCTGCACCACCAA
        ATGGCCTACCGAGGAGCTCTGATTCTGTCCAAAGCATCTTGGCAAGGTTCGCAGCTAAGGGCTTCAGCCC
        TCAAGACGTGGTTGCGCTACTTGGAACCCACAGCATTGCGATCCAGTTCCAAGATGATCCCGCGAGAGCT
        GGCACACCACTCGACTCGACGCCAGCTATATGTGACATTAGGTATTTCGCAGAGACGAAGGCCGGTACTG
        CGCCTTATAGTCTTAGGAGTGACCGTCTCATGTCCAGCGCACCCGAGACTTATAGACCATGGGCCGTCTA
        CGCAAAGTCGACAGCGATGTGGGCCGATGCTTTTATAAGTGCATGGAGCCGGTTCGCGGTCATTGGCAAC
        GACCCACAGAGTCTCCAGGACTGCTCTCATCTTATCCCCAAGTCCACGGTTCCCCGTGCCAGACAGGTGG
        CTCACGCACAAATGATGGAAAAGTTGACCAAGAAGTTCATAGCATAG