Browse • Rhizophagus irregularis DAOM 197198 v1.0
Please note that this organism is for archival use only. Please see the current Rhizophagus irregularis DAOM197198 v2.0 site for the latest data and information.
Name:fgenesh1_kg.463_#_106_#_TRINITY_DN7632_c1_g1_i2
Protein ID:1723713
Location:scaffold_463:55667-58674
Strand:+
Number of exons:8
Description:
Best Hit:gi|296824164|ref|XP_002850583.1| DNA ligase [Arthroderma otae CBS 113480] >gi|238838137|gb|EEQ27799.1| DNA ligase [Arthroderma otae CBS 113480] (model%: 97, hit%: 84, score: 1733, %id: 42) [no tax name]
total hits(shown)

319 (10)

ASPECT
GO Id GO Desc
Interpro Id Interpro Desc
Molecular Function
0005524 ATP binding
IPR012310 DNA ligase, ATP-dependent, central
IPR000977 DNA ligase, ATP-dependent
0003910 DNA ligase (ATP) activity
IPR012310 DNA ligase, ATP-dependent, central
IPR012308 DNA ligase, ATP-dependent, N-terminal
IPR012309 DNA ligase, ATP-dependent, C-terminal
IPR000977 DNA ligase, ATP-dependent
0003677 DNA binding
IPR012308 DNA ligase, ATP-dependent, N-terminal
0003909 DNA ligase activity
IPR016059 DNA ligase, ATP-dependent, conserved site
Biological Process
0006281 DNA repair
IPR012310 DNA ligase, ATP-dependent, central
IPR012308 DNA ligase, ATP-dependent, N-terminal
IPR012309 DNA ligase, ATP-dependent, C-terminal
IPR000977 DNA ligase, ATP-dependent
0006310 DNA recombination
IPR012310 DNA ligase, ATP-dependent, central
IPR012308 DNA ligase, ATP-dependent, N-terminal
IPR012309 DNA ligase, ATP-dependent, C-terminal
IPR000977 DNA ligase, ATP-dependent
KOG GROUP
Information Storage And Processing
KOG Id
KOG0967		 KOG Class
Replication, recombination and repair
 		 KOG Desc
ATP-dependent DNA ligase I

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View nucleotide and 3-frame translation    To Genome Browser
NCBI blastp      Predicted number of transmembrane domains: 0

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