Status
[March 2016] The Trichosporon guehoae Phaff 60-59
genome was sequenced using the Illumina platform and assembled with
Velvet
and AllPathsLG release version R49403 (Gnerre et al.,
2011).
Mitochondrial genome was assembled separately and is available in
the downloads section.
Summary statistics for the Trichosporon guehoae v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 31.64 |
| Sequencing read coverage depth | 155.3x |
| # of contigs | 2548 |
| # of scaffolds | 2089 |
| # of scaffolds >= 2Kbp | 1593 |
| Scaffold N50 | 297 |
| Scaffold L50 (Mbp) | 0.03 |
| # of gaps | 459 |
| % of scaffold length in gaps | 1.1% |
| Three largest Scaffolds (Mbp) | 0.17, 0.15, 0.15 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 28582 | 21876 | 76.5% |
| Ests | est.fasta | 118447581 | 98592808 | 83.2% |
| Gene Models | FilteredModels2 | |
| length (bp) of: | average | median |
| gene | 1804 | 1600 |
| transcript | 1460 | 1240 |
| exon | 339 | 197 |
| intron | 106 | 54 |
| description: | ||
| protein length (aa) | 426 | 349 |
| exons per gene | 4.31 | 4 |
| # of gene models | 10572 |
Collaborators
Kyria Boundy-Mills, University of California - Davis
Jon Magnuson, Pacific Northwest National Laboratory, USA
Joseph Spatafora, Oregon State University, USA
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
