Trametes meyenii CIRM-BRFM 1810 v1.0

Status

[August 2017] The Trametes meyenii CIRM-BRFM 1810 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Trametes meyenii CIRM-BRFM 1810 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.37
Sequencing read coverage depth 159.21x
# of contigs 24
# of scaffolds 24
# of scaffolds >= 2Kbp 24
Scaffold N50 6
Scaffold L50 (Mbp) 1.96
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 5.03, 3.81, 2.72


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 70361 68401 97.2%
Ests est.fasta 103008941 102409491 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1867 1611
transcript 1514 1301
exon 249 151
intron 71 60
description:
protein length (aa) 446 367
exons per gene 6.08 5
# of gene models 12440


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.