Leiotrametes lactinea CIRM-BRFM 1664 v1.0

Status

[August 2017] The Leiotrametes lactinea CIRM-BRFM 1664 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Leiotrametes lactinea CIRM-BRFM 1664 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 36.34
Sequencing read coverage depth 143.94x
# of contigs 44
# of scaffolds 44
# of scaffolds >= 2Kbp 44
Scaffold N50 8
Scaffold L50 (Mbp) 1.67
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.28, 2.87, 2.56


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 52977 51581 97.4%
Ests est.fasta 113912703 112669539 98.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1884 1629
transcript 1534 1317
exon 251 152
intron 70 60
description:
protein length (aa) 448 371
exons per gene 6.11 5
# of gene models 12284


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.