Syncephalastrum racemosum NRRL 2496 v1.0
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Status

[Feb 2016] The Syncephalastrum racemosum NRRL 2496  genome was sequenced using the PacBio platform and assembled together with Falcon version 0.2.2 (https://github.com/PacificBiosciences/FALCON). Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Syncephalastrum racemosum NRRL 2496 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 30.75
Sequencing read coverage depth 95.9912x
# of contigs 49
# of scaffolds 49
# of scaffolds >= 2Kbp 48
Scaffold N50 5
Scaffold L50 (Mbp) 2.37
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.85, 4.60, 2.86


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 23971 23723 99.0%
Ests est.fasta 122052690 121227703 99.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1660 1420
transcript 1401 1179
exon 310 186
intron 76 64
description:
protein length (aa) 405 331
exons per gene 4.52 4
# of gene models 11124


Collaborators

Jason Stajich, UC Riverside, California

Joey Spatafora, Oregon State, Oregon

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.