Info • Suillus brevipes Sb2 v2.0

Status

Assembly v2 (May 2013) is an improved draft assembly. Illumina gDNA reads were assembled using AllPathsLG and then patched with PacBio gDNA reads using PBJelly.

Summary statistics for the Suillus brevipes Sb2 v2.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 52.03
Sequencing read coverage depth 101.7x
# of contigs 2205
# of scaffolds 1550
# of scaffolds >= 2Kbp 1132
Scaffold N50 84
Scaffold L50 (Mbp) 0.16
# of gaps 655
% of scaffold length in gaps 1.3%
Three largest Scaffolds (Mbp) 1.03, 0.76, 0.69


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 43321 40052 92.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1405 1095
transcript 1159 894
exon 241 155
intron 67 55
description:
protein length (aa) 345 260
exons per gene 4.80 4
# of gene models 21458


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.