Info • Stachybotrys elegans MPI-CAGE-CH-0235 v1.0

Status

[May 2017] The Stachybotrys elegans MPI-CAGE-CH-0235 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Stachybotrys elegans v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 43.47
Sequencing read coverage depth 152.86x
# of contigs 73
# of scaffolds 73
# of scaffolds >= 2Kbp 71
Scaffold N50 7
Scaffold L50 (Mbp) 2.15
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 6.02, 3.52, 2.82


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 39233 36565 93.2%
Ests est.fasta 98352962 98014798 99.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1717 1473
transcript 1569 1339
exon 543 333
intron 80 59
description:
protein length (aa) 463 386
exons per gene 2.89 2
# of gene models 14925


Collaborators

Francis M. Martin, INRA, France.

Joseph Spatafora, Oregon State University, USA

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Mesny F, Miyauchi S, Thiergart T, Pickel B, Atanasova L, Karlsson M, Hüttel B, Barry KW, Haridas S, Chen C, Bauer D, Andreopoulos W, Pangilinan J, LaButti K, Riley R, Lipzen A, Clum A, Drula E, Henrissat B, Kohler A, Grigoriev IV, Martin FM, Hacquard S
Genetic determinants of endophytism in the Arabidopsis root mycobiome.
Nat Commun. 2021 Dec 10;12(1):7227. doi: 10.1038/s41467-021-27479-y

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.