Status
The diploid genome of Sphaerobolus stellatus SS14 was sequenced using the Illumina platform and assembled with AllPathsLG. The genome was annotated with the JGI annotation pipeline and custom analyses.
Summary statistics for the Sphaerobolus stellatus v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp} | 176.37 |
| Sequencing read coverage depth | 57.5 |
| # of contigs | 13156 |
| # of scaffolds | 1460 |
| # of scaffolds >= 2Kbp | 1150 |
| Scaffold N50 | 85 |
| Scaffold L50 (Mbp) | 0.58 |
| # of gaps | 11696 |
| % of scaffold length in gaps | 30.7% |
| Three largest Scaffolds (Mbp) | 3.05, 2.97, 2.63 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| RNAseq contigs | RNAseq contigs | 40824 | 31621 | 77.5% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1342 | 988 |
| transcript | 991 | 770 |
| exon | 212 | 140 |
| intron | 98 | 57 |
| description: | ||
| protein length (aa) | 309 | 236 |
| exons per gene | 4.67 | 3 |
| # of gene models | 35274 |
Collaborators
- David Hibbett, Clark University, MA, USA
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Kohler A, Kuo A, Nagy LG, Morin E, Barry KW, Buscot F, Canbäck B, Choi C, Cichocki N, Clum A, Colpaert J, Copeland A, Costa MD, Doré J, Floudas D, Gay G, Girlanda M, Henrissat B, Herrmann S, Hess J, Högberg N, Johansson T, Khouja HR, LaButti K, Lahrmann U, Levasseur A, Lindquist EA, Lipzen A, Marmeisse R, Martino E, Murat C, Ngan CY, Nehls U, Plett JM, Pringle A, Ohm RA, Perotto S, Peter M, Riley R, Rineau F, Ruytinx J, Salamov A, Shah F, Sun H, Tarkka M, Tritt A, Veneault-Fourrey C, Zuccaro A, Tunlid A, Grigoriev IV, Hibbett DS, Martin F
Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists.
Nat Genet. 2015 Apr;47(4):410-5. doi: 10.1038/ng.3223
Kohler A, Kuo A, Nagy LG, Morin E, Barry KW, Buscot F, Canbäck B, Choi C, Cichocki N, Clum A, Colpaert J, Copeland A, Costa MD, Doré J, Floudas D, Gay G, Girlanda M, Henrissat B, Herrmann S, Hess J, Högberg N, Johansson T, Khouja HR, LaButti K, Lahrmann U, Levasseur A, Lindquist EA, Lipzen A, Marmeisse R, Martino E, Murat C, Ngan CY, Nehls U, Plett JM, Pringle A, Ohm RA, Perotto S, Peter M, Riley R, Rineau F, Ruytinx J, Salamov A, Shah F, Sun H, Tarkka M, Tritt A, Veneault-Fourrey C, Zuccaro A, Tunlid A, Grigoriev IV, Hibbett DS, Martin F
Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists.
Nat Genet. 2015 Apr;47(4):410-5. doi: 10.1038/ng.3223
Links
- 1000 Fungal Genomes Project
- JGI PhyloGroup Portals: Fungi Dikarya Basidiomycota Agaricomycotina Agaricomycetes Geastrales
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
