Info • Sarcoscypha coccinea ATCC 58028 v1.0

Status

[March 2015] The Sarcoscypha coccinea ATCC 58028 genome was sequenced using Illumina and assembled with AllPathsLG version R49403 (Gnerre et al. 2010).

Summary statistics for the Sarcoscypha coccinea ATCC 58028 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 39.09
Sequencing read coverage depth 95.9x
# of contigs 1481
# of scaffolds 461
# of scaffolds >= 2Kbp 412
Scaffold N50 73
Scaffold L50 (Mbp) 0.17
# of gaps 1020
% of scaffold length in gaps 3.1%
Three largest Scaffolds (Mbp) 0.75, 0.61, 0.61


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 27192 26143 96.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1530 1263
transcript 1388 1128
exon 476 299
intron 76 55
description:
protein length (aa) 401 317
exons per gene 2.92 2
# of gene models 13738


Collaborators

Joey Spatafora, Oregon State University

Jon Magnuson, Pacific Northwest National Laboratory

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.