Info • Russula vinacea BPL710 v1.0

Status

[April 2017] The Russula vinacea BPL710 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Russula vinacea BPL710 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 43.28
Sequencing read coverage depth 86.79x
# of contigs 824
# of scaffolds 824
# of scaffolds >= 2Kbp 803
Scaffold N50 60
Scaffold L50 (Mbp) 0.18
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.22, 0.92, 0.80


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 136243 71428 52.4%
Ests est.fasta 74026856 64236597 86.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1616 1330
transcript 1288 1056
exon 224 147
intron 71 58
description:
protein length (aa) 369 283
exons per gene 5.74 5
# of gene models 12673


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Looney B, Miyauchi S, Morin E, Drula E, Courty PE, Kohler A, Kuo A, LaButti K, Pangilinan J, Lipzen A, Riley R, Andreopoulos W, He G, Johnson J, Nolan M, Tritt A, Barry KW, Grigoriev IV, Nagy LG, Hibbett D, Henrissat B, Matheny PB, Labbé J, Martin FM
Evolutionary transition to the ectomycorrhizal habit in the genomes of a hyperdiverse lineage of mushroom-forming fungi.
New Phytol. 2022 Mar;233(5):2294-2309. doi: 10.1111/nph.17892

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.