Status
June 2013. The Rhizopus microsporus var. microsporus genome was sequenced using the Illumina platform and assembled with AllPathsLG version R41043. Subsequently, the genome was annotated with the JGI annotation pipeline and custom analyses.
Summary statistics for the Rhizopus microsporus var
microsporus v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 25.97 |
| Sequencing read coverage depth | 143.6 |
| # of contigs | 823 |
| # of scaffolds | 131 |
| # of scaffolds >= 2Kbp | 86 |
| Scaffold N50 | 8 |
| Scaffold L50 (Mbp) | 1.12 |
| # of gaps | 692 |
| % of scaffold length in gaps | 2.4% |
| Three largest Scaffolds (Mbp) | 2.78, 2.31, 1.88 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | EST_contigs | 68968 | 43812 | 63.5% |
| Gene Models | FilteredModels2 | |
| length (bp) of: | average | median |
| gene | 1452 | 1212 |
| transcript | 1268 | 1047 |
| exon | 315 | 188 |
| intron | 63 | 56 |
| description: | ||
| protein length (aa) | 377 | 303 |
| exons per gene | 4.03 | 3 |
| # of gene models | 10905 |
Collaborators
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Mondo SJ, Lastovetsky OA, Gaspar ML, Schwardt NH, Barber CC, Riley R, Sun H, Grigoriev IV, Pawlowska TE
Bacterial endosymbionts influence host sexuality and reveal reproductive genes of early divergent fungi.
Nat Commun. 2017 Nov 29;8(1):1843. doi: 10.1038/s41467-017-02052-8
Mondo SJ, Lastovetsky OA, Gaspar ML, Schwardt NH, Barber CC, Riley R, Sun H, Grigoriev IV, Pawlowska TE
Bacterial endosymbionts influence host sexuality and reveal reproductive genes of early divergent fungi.
Nat Commun. 2017 Nov 29;8(1):1843. doi: 10.1038/s41467-017-02052-8
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
