Ramicandelaber brevisporus CBS 109374 v1.0
Please help us to improve the JGI Genome Portal. Your feedback is very important to us.
Click here to take the Annual JGI Genome Portal Survey.

Status

Assembly v1 (August 2014) is a minimal draft assembly. A total of 1262 scaffolds and 25.5 Mbp were assembled from Illumina gDNAs using Velvet and AllPathsLG in succession.

Summary statistics for the Ramicandelaber brevisporus CBS 109374 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 25.53
Sequencing read coverage depth 168.2x
# of contigs 2789
# of scaffolds 1262
# of scaffolds >= 2Kbp 1011
Scaffold N50 190
Scaffold L50 (Mbp) 0.04
# of gaps 1527
% of scaffold length in gaps 13.8%
Three largest Scaffolds (Mbp) 0.20, 0.18, 0.15


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 17497 13190 75.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1509 1200
transcript 1412 1115
exon 956 668
intron 205 106
description:
protein length (aa) 418 320
exons per gene 1.48 1
# of gene models 9281


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.