Info • Punctularia strigosozonata v1.0

Status

This draft assembly used Illumina and Roche (454) data.  The Illumina data were assemblyed using Velvet. The Velvet assembly was subsequently shredded, combined with the Roche data, and fed into the Newbler assembly program.

Summary statistics for the Punctularia strigosozonata v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 34.17
Sequencing read coverage depth 45.55
# of contigs 1327
# of scaffolds 195
# of scaffolds >= 2Kbp 195
Scaffold N50 6
Scaffold L50 (Mbp) 2.12
# of gaps 566
% of scaffold length in gaps 3.2%
Three largest Scaffolds (Mbp) 4.68, 2.93, 2.82


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters EstClusters 12935 12367 95.6%
Other EST1 1064040 1033490 97.1%
Other EST2 1041053 995114 95.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1859 1540
transcript 1496 1220
exon 240 145
intron 71 58
description:
protein length (aa) 440 358
exons per gene 6.23 5
# of gene models 11538


Collaborators

  • PI: Igor Grigoriev, DOE Joint Genome Institute
  • David Hibbett, Clark University

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.