Status
[May 2015] Polyporus brumalis BRFM 1820 v1.0 is a standard draft produced with Illumina reads and assembled with AllPathsLG R49403, (Gnerre et al. 2010).
Summary statistics for the Polyporus brumalis BRFM 1820
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 45.72 |
| Sequencing read coverage depth | 94.9 |
| # of contigs | 1040 |
| # of scaffolds | 621 |
| # of scaffolds >= 2Kbp | 485 |
| Scaffold N50 | 34 |
| Scaffold L50 (Mbp) | 0.36 |
| # of gaps | 419 |
| % of scaffold length in gaps | 1.4% |
| Three largest Scaffolds (Mbp) | 1.62, 1.41, 1.32 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | JGI_RNA_contigs | 45971 | 45360 | 98.7% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1701 | 1447 |
| transcript | 1392 | 1176 |
| exon | 266 | 161 |
| intron | 75 | 59 |
| description: | ||
| protein length (aa) | 395 | 326 |
| exons per gene | 5.24 | 4 |
| # of gene models | 18244 |
Collaborators
Eric Record (PI) and Marie-Noëlle Rosso, Biodiversity and Biotechnology of Fungi, INRA - Aix Marseille Université
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Miyauchi S, Rancon A, Drula E, Hage H, Chaduli D, Favel A, Grisel S, Henrissat B, Herpoël-Gimbert I, Ruiz-Dueñas FJ, Chevret D, Hainaut M, Lin J, Wang M, Pangilinan J, Lipzen A, Lesage-Meessen L, Navarro D, Riley R, Grigoriev IV, Zhou S, Raouche S, Rosso MN
Integrative visual omics of the white-rot fungus Polyporus brumalis exposes the biotechnological potential of its oxidative enzymes for delignifying raw plant biomass.
Biotechnol Biofuels. 2018;11():201. doi: 10.1186/s13068-018-1198-5
Miyauchi S, Rancon A, Drula E, Hage H, Chaduli D, Favel A, Grisel S, Henrissat B, Herpoël-Gimbert I, Ruiz-Dueñas FJ, Chevret D, Hainaut M, Lin J, Wang M, Pangilinan J, Lipzen A, Lesage-Meessen L, Navarro D, Riley R, Grigoriev IV, Zhou S, Raouche S, Rosso MN
Integrative visual omics of the white-rot fungus Polyporus brumalis exposes the biotechnological potential of its oxidative enzymes for delignifying raw plant biomass.
Biotechnol Biofuels. 2018;11():201. doi: 10.1186/s13068-018-1198-5
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
