Info • Piromyces sp. E2 v1.0

Status

Assembly v1 (March 2011) is a draft assembly of Sanger gDNA reads and shredded Velvet contigs. The latter were assembled from Solexa gDNA reads. A total of 1656 scaffolds and 71.0 Mbp were assembled using Newbler.

Summary statistics for the Piromyces sp. E2 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 71.02
Sequencing read coverage depth median ~6x, mean ~20x
# of contigs 17217
# of scaffolds 1656
# of scaffolds >= 2Kbp 1656
Scaffold N50 143
Scaffold L50 (Mbp) 0.14
# of gaps 15561
% of scaffold length in gaps 39.7%
Three largest Scaffolds (Mbp) 0.84, 0.64, 0.64


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests ESTs 17080 12116 70.9%
Other EST_cluster_consensi 4947 2841 57.4%
Other NCBI_CDSs 8 5 62.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1674 1180
transcript 1183 852
exon 383 164
intron 237 128
description:
protein length (aa) 387 277
exons per gene 3.09 2
# of gene models 14648


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.