Info • Phyllosticta citricarpa CBS 127454 v1.0

Status

[April 2017] The Phyllosticta citricarpa CBS 127454 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Phyllosticta citricarpa v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 28.95
Sequencing read coverage depth 171.27x
# of contigs 152
# of scaffolds 152
# of scaffolds >= 2Kbp 151
Scaffold N50 23
Scaffold L50 (Mbp) 0.44
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.12, 1.03, 0.91


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 45922 38603 84.1%
Ests est.fasta 359723463 351688549 97.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1624 1355
transcript 1491 1220
exon 560 351
intron 82 58
description:
protein length (aa) 429 338
exons per gene 2.66 2
# of gene models 11088


Collaborators

Pedro Crous, CBS-KNAW, The Netherlands.

Joseph Spatafora, Oregon State University, USA

Francis M. Martin, INRA, France.

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Guarnaccia V, Gehrmann T, Silva-Junior GJ, Fourie PH, Haridas S, Vu D, Spatafora J, Martin FM, Robert V, Grigoriev IV, Groenewald JZ, Crous PW
Phyllosticta citricarpa and sister species of global importance to Citrus.
Mol Plant Pathol. 2019 Dec;20(12):1619-1635. doi: 10.1111/mpp.12861

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.